Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.1e-260 902.9 507 100.0
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 6.3e-187 657.9 472 73.5
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 9.0e-186 654.1 473 72.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.0e-184 650.6 472 72.9
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.2e-184 649.4 480 72.3
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 6.5e-184 647.9 475 71.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.5e-183 646.0 481 73.4
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.5e-183 644.8 473 74.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.6e-182 641.7 474 71.3
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 4.6e-182 641.7 472 71.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.0e-181 640.6 479 70.1
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.8e-181 639.8 471 72.4
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.3e-181 639.4 471 72.4
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.3e-181 639.4 478 70.1
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 5.1e-181 638.3 473 73.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.7e-181 637.9 471 72.4
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 8.8e-181 637.5 483 70.2
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.5e-180 636.0 471 69.9
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.5e-180 636.0 489 71.8
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 5.7e-180 634.8 471 70.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 7.4e-180 634.4 472 70.3
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.7e-179 633.3 472 70.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.4e-178 630.2 490 68.2
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.4e-178 630.2 474 69.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.1e-178 629.0 478 68.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 3.1e-178 629.0 485 68.7
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 6.9e-178 627.9 480 70.0
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.6e-177 625.9 469 68.9
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.6e-177 625.9 476 70.2
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.4e-177 625.5 478 70.7
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 4.5e-177 625.2 475 70.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 4.5e-177 625.2 479 70.4
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 5.9e-177 624.8 470 72.6
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 5.9e-177 624.8 470 72.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.0e-176 624.0 477 70.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.3e-176 623.6 471 69.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-176 623.6 481 68.0
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.9e-175 619.8 479 68.1
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.2e-175 618.6 487 70.2
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 6.1e-174 614.8 479 67.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.3e-173 612.8 472 68.4
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.0e-173 612.5 487 66.7
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.1e-173 611.7 474 68.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.0e-172 609.8 477 66.7
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-172 609.8 487 65.5
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 4.4e-172 608.6 474 69.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.4e-172 608.6 519 64.7
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 7.4e-172 607.8 523 63.1
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 7.4e-172 607.8 474 67.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 9.7e-172 607.4 474 67.5
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 9.7e-172 607.4 474 68.6
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.3e-171 607.1 485 70.9
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.7e-171 606.7 507 64.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.2e-171 606.3 476 66.2
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.2e-171 606.3 476 66.4
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.3e-171 604.7 471 67.1
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 6.3e-171 604.7 473 71.0
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 6.3e-171 604.7 473 70.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 6.3e-171 604.7 473 71.0
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 8.2e-171 604.4 484 69.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-170 604.0 466 67.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.4e-170 603.6 469 69.9
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.8e-170 603.2 480 66.2
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-170 602.8 473 70.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 4.1e-170 602.1 480 67.9
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-169 600.5 449 69.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 2.0e-169 599.7 463 70.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 4.5e-169 598.6 478 66.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.5e-169 598.6 474 67.7
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.9e-169 598.2 489 68.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-168 597.0 469 71.6
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.3e-168 597.0 473 67.2
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.7e-168 596.7 513 63.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.2e-168 596.3 482 65.8
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 5.0e-168 595.1 470 72.1
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 5.0e-168 595.1 473 67.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 8.5e-168 594.3 463 70.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.5e-168 594.3 482 66.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.9e-167 593.2 471 68.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 5.5e-167 591.7 334 86.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 9.4e-167 590.9 471 67.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-166 590.5 477 71.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 6.1e-166 588.2 490 62.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.1e-166 588.2 472 65.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.1e-166 588.2 335 85.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 8.0e-166 587.8 469 68.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.4e-165 587.0 513 62.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.3e-165 586.3 471 66.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 3.9e-165 585.5 476 67.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 8.8e-165 584.3 473 64.9
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.1e-164 583.9 473 65.8
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.5e-164 583.6 483 68.7
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.6e-164 582.8 469 65.7
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.7e-163 580.1 336 83.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.4e-162 576.2 473 66.0
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.1e-162 575.9 481 65.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.3e-162 575.1 482 66.0
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 9.1e-162 574.3 516 62.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-161 573.9 470 67.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 5.9e-161 571.6 430 69.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 7.7e-161 571.2 335 82.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.2e-160 569.7 527 59.4
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 8.5e-160 567.8 334 82.6
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.9e-159 566.6 475 65.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.2e-159 565.8 512 63.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-159 565.5 470 64.5
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.2e-158 563.9 469 65.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 4.7e-158 562.0 332 81.9
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-156 557.4 471 68.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-156 557.4 471 68.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.0e-156 556.6 481 64.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 4.4e-156 555.4 470 68.5
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 7.5e-156 554.7 481 64.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.3e-155 553.9 460 69.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.7e-155 553.5 488 63.9
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 3.7e-155 552.4 494 63.2
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 4.5e-153 545.4 478 62.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.8e-152 542.3 405 69.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.6e-150 535.8 334 78.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.2e-147 526.6 280 90.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 2.4e-146 523.1 504 58.1
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 9.1e-146 521.2 274 91.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.0e-144 517.7 460 58.5
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.3e-144 517.3 436 67.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.3e-144 517.3 404 68.3
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 6.8e-141 505.0 468 60.7
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 9.8e-140 501.1 457 60.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.7e-137 493.0 335 72.2
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.6e-137 492.3 500 57.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.1e-133 479.6 423 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.0e-132 476.9 329 70.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.6e-132 476.5 335 71.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.2e-130 469.5 334 71.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.5e-127 459.9 470 58.5
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.1e-125 454.5 330 72.1
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.3e-125 453.4 449 57.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-121 440.7 567 50.3
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.1e-121 440.3 410 55.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.6e-120 435.3 335 66.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-117 427.2 442 55.4
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.7e-104 381.7 329 56.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.0e-101 372.9 337 57.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.9e-101 372.1 401 54.6
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-100 370.5 287 66.2
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.6e-81 307.8 479 44.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.4e-77 294.7 260 58.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.5e-60 238.0 477 42.3
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.3e-53 213.0 397 37.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.7e-38 163.7 244 44.3
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.1e-37 160.6 120 69.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-35 155.6 335 34.9
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.6e-28 131.7 81 76.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.5e-26 125.2 116 56.0
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.1e-18 99.0 197 39.1
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.9e-18 98.2 92 56.5
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 5.6e-18 96.7 90 54.4
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-14 84.7 207 36.2
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 8.3e-14 82.8 215 34.9
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 5.8e-07 60.1 91 41.8


User provided reference genes

Program Settings