Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.3e-137 493.0 251 100.0
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.3e-97 359.4 271 70.1
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 8.7e-97 357.5 263 73.0
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 9.6e-96 354.0 266 72.2
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.8e-95 352.4 275 72.0
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.4e-91 339.3 255 70.6
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.2e-90 337.0 262 71.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 5.1e-89 331.6 244 73.4
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.7e-89 330.9 266 68.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.9e-88 329.7 258 69.0
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 7.3e-88 327.8 259 69.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 9.6e-88 327.4 242 72.3
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 9.6e-88 327.4 260 68.8
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.6e-87 326.6 177 90.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.1e-87 326.2 257 69.3
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 3.6e-87 325.5 232 74.6
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 8.1e-87 324.3 259 68.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-86 323.6 273 67.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.4e-86 322.8 261 67.4
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.1e-86 322.4 259 68.3
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.0e-86 322.0 229 74.7
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.3e-86 321.6 263 65.8
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 5.3e-86 321.6 257 71.6
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 5.3e-86 321.6 261 67.0
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 6.9e-86 321.2 256 69.1
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 6.9e-86 321.2 256 68.8
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.5e-85 320.1 234 72.2
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 2.6e-85 319.3 231 73.6
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.4e-85 318.9 212 77.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.4e-85 318.9 234 72.6
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.4e-85 318.9 246 69.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 5.8e-85 318.2 222 74.8
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 5.8e-85 318.2 222 75.2
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.8e-85 318.2 242 72.3
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 7.6e-85 317.8 265 66.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 7.6e-85 317.8 206 77.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 9.9e-85 317.4 261 67.0
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 9.9e-85 317.4 234 72.2
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 9.9e-85 317.4 261 69.3
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 9.9e-85 317.4 263 68.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.3e-84 317.0 247 70.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-84 316.6 258 69.0
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.7e-84 316.6 264 66.3
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.2e-84 316.2 276 64.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.2e-84 316.2 259 67.2
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 2.2e-84 316.2 259 65.3
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.2e-84 316.2 240 71.2
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.9e-84 315.8 256 67.2
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-84 315.5 235 72.8
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.8e-84 315.5 198 81.3
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.8e-84 315.5 206 77.2
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.9e-84 315.1 213 76.5
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 4.9e-84 315.1 247 69.6
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 6.4e-84 314.7 213 76.5
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 8.4e-84 314.3 261 65.5
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 8.4e-84 314.3 257 67.3
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 8.4e-84 314.3 251 67.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 8.4e-84 314.3 256 67.2
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.1e-83 313.9 259 66.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.1e-83 313.9 226 75.7
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.4e-83 313.5 278 63.7
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-83 313.5 235 71.9
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.4e-83 313.5 224 74.1
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.4e-83 313.5 272 64.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.9e-83 313.2 262 68.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.4e-83 312.8 219 74.9
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 3.2e-83 312.4 265 66.0
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.2e-83 312.4 222 73.9
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 3.2e-83 312.4 275 65.8
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.2e-83 312.4 213 75.1
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.2e-83 312.0 222 74.3
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 5.4e-83 311.6 212 76.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.4e-83 311.6 214 75.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 7.1e-83 311.2 230 73.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 7.1e-83 311.2 222 73.9
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 9.3e-83 310.8 220 73.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-82 310.5 224 74.6
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.2e-82 310.5 231 71.9
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.1e-82 309.7 219 74.4
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 4.6e-82 308.5 214 76.6
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.9e-82 307.8 278 64.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.9e-82 307.8 218 74.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.0e-81 307.4 268 63.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.0e-81 307.4 223 74.9
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.0e-81 307.4 262 65.6
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 3.9e-81 305.4 264 64.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 5.1e-81 305.1 212 75.0
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 8.7e-81 304.3 218 72.5
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.1e-80 303.9 218 72.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.5e-80 303.5 222 73.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.5e-80 303.5 217 73.3
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.5e-80 303.5 236 69.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.5e-80 303.5 250 68.0
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.3e-80 302.4 256 64.8
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 5.6e-80 301.6 258 64.3
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 6.2e-79 298.1 212 73.1
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 8.1e-79 297.7 218 71.6
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.1e-78 297.4 262 63.4
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.1e-78 297.4 264 64.0
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.4e-78 297.0 233 67.0
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-78 297.0 277 62.8
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.4e-78 296.2 212 72.6
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.0e-78 295.4 235 68.5
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 5.3e-78 295.0 204 76.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 9.0e-78 294.3 236 68.2
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 9.0e-78 294.3 264 62.9
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.2e-77 293.9 235 68.1
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 2.6e-77 292.7 198 75.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.4e-77 292.4 233 68.2
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.5e-77 292.0 275 61.8
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 2.2e-76 289.7 267 61.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.9e-75 286.6 238 66.0
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 3.2e-75 285.8 259 64.1
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 3.2e-75 285.8 209 71.3
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-74 283.9 295 57.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 4.6e-74 282.0 253 63.2
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 3.9e-73 278.9 244 61.5
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 8.7e-73 277.7 248 67.7
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.1e-71 273.1 204 71.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.8e-70 270.0 233 64.8
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.1e-70 269.2 206 69.4
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.9e-68 262.7 232 65.5
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.2e-66 257.3 196 67.3
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 3.5e-66 255.8 166 77.7
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-65 253.8 192 70.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-64 250.4 298 53.4
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.3e-64 248.8 166 77.7
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 7.4e-64 248.1 203 68.5
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 9.7e-64 247.7 133 88.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 9.7e-64 247.7 208 64.4
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.6e-63 246.9 237 56.1
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.2e-63 246.5 172 73.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.5e-61 240.4 224 58.9
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.5e-61 240.4 133 84.2
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 5.9e-61 238.4 180 73.3
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.0e-57 227.6 210 62.4
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.3e-57 226.5 180 68.9
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-57 225.7 262 55.3
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-56 223.8 256 55.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.7e-56 221.9 275 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 9.7e-56 221.1 138 74.6
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 3.1e-54 216.1 249 50.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 6.9e-54 214.9 148 72.3
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.5e-53 212.2 159 71.7
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.9e-51 206.8 246 50.4
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-50 203.8 166 68.1
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 2.3e-49 199.9 159 67.9
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.8e-49 198.0 149 70.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 7.0e-46 188.3 126 74.6
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-43 181.0 214 43.5
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 8.0e-42 174.9 215 50.7
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 8.2e-39 164.9 145 59.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 4.5e-37 159.1 351 36.5
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.9e-28 129.8 188 38.3
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.5e-27 127.5 215 36.3
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.2e-24 117.9 231 35.9
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.9e-20 103.2 57 82.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-19 100.9 57 80.7
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 6.1e-18 95.5 59 81.4
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.0e-17 94.7 81 67.9
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.9e-17 91.7 84 59.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 4.6e-13 79.3 83 55.4
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.6e-11 72.4 40 85.0
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 7.3e-11 72.0 101 41.6
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.5e-11 71.6 130 45.4
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-10 70.5 36 88.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.8e-09 67.4 37 86.5
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.2e-08 64.7 32 93.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.4e-08 63.2 57 63.2
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.7e-07 60.8 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.3e-07 58.5 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 8.3e-07 58.5 31 87.1


User provided reference genes

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