Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12039 Selenicereus undatus HOM05D003169 ORTHO05D003700 6.1e-135 484.2 249 100.0
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 9.4e-35 151.4 121 63.6
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 4.6e-34 149.1 120 64.2
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.4e-33 147.5 121 62.0
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 4.3e-32 142.5 116 59.5
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 4.8e-31 139.0 121 58.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.8e-30 137.1 118 55.1
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.8e-30 137.1 121 56.2
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 2.4e-30 136.7 114 58.8
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 4.1e-30 136.0 124 55.6
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 6.9e-30 135.2 121 55.4
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.5e-29 134.0 125 56.8
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 1.5e-29 134.0 116 58.6
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.0e-29 133.7 116 57.8
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.0e-29 133.7 116 57.8
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 2.0e-29 133.7 154 44.8
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 2.0e-29 133.7 154 45.5
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 2.6e-29 133.3 116 53.4
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 3.4e-29 132.9 118 55.1
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 3.4e-29 132.9 119 56.3
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 5.9e-29 132.1 118 54.2
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 7.7e-29 131.7 116 58.6
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.0e-28 131.3 116 55.2
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 1.3e-28 131.0 122 54.9
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.3e-28 131.0 128 54.7
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 1.3e-28 131.0 116 56.9
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 1.3e-28 131.0 117 59.0
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 1.3e-28 131.0 118 51.7
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.7e-28 130.6 119 55.5
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.7e-28 130.6 110 60.0
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 1.7e-28 130.6 110 60.0
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 2.2e-28 130.2 122 54.9
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 2.9e-28 129.8 118 53.4
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 2.9e-28 129.8 116 56.0
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 3.8e-28 129.4 116 60.3
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 3.8e-28 129.4 116 55.2
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 3.8e-28 129.4 116 55.2
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 3.8e-28 129.4 114 57.9
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 5.0e-28 129.0 116 56.0
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 5.0e-28 129.0 116 54.3
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 8.5e-28 128.3 133 55.6
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 8.5e-28 128.3 129 54.3
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 1.4e-27 127.5 133 55.6
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 1.4e-27 127.5 116 52.6
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 2.5e-27 126.7 125 53.6
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 2.5e-27 126.7 110 57.3
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.5e-27 126.7 118 50.8
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 3.2e-27 126.3 118 50.0
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 3.2e-27 126.3 116 56.9
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.2e-27 126.3 118 50.8
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 4.2e-27 125.9 125 54.4
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 4.2e-27 125.9 125 54.4
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 4.2e-27 125.9 125 54.4
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 4.2e-27 125.9 122 51.6
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 5.5e-27 125.6 116 57.8
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 5.5e-27 125.6 116 51.7
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 7.2e-27 125.2 118 50.8
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 7.2e-27 125.2 123 52.0
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 9.4e-27 124.8 119 55.5
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 9.4e-27 124.8 126 56.3
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 1.2e-26 124.4 132 54.5
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.7e-26 123.2 125 51.2
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.7e-26 123.2 137 48.9
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 3.6e-26 122.9 116 55.2
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.6e-26 122.9 120 52.5
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 4.7e-26 122.5 126 53.2
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 4.7e-26 122.5 116 53.4
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 4.7e-26 122.5 121 53.7
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 6.1e-26 122.1 124 51.6
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 6.1e-26 122.1 123 51.2
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 7.9e-26 121.7 127 52.0
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 7.9e-26 121.7 114 52.6
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 7.9e-26 121.7 119 53.8
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 7.9e-26 121.7 118 50.0
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 1.0e-25 121.3 109 52.3
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 1.0e-25 121.3 115 52.2
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.0e-25 121.3 127 48.8
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 2.3e-25 120.2 121 50.4
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 3.0e-25 119.8 130 50.0
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 3.0e-25 119.8 124 51.6
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 3.9e-25 119.4 111 54.1
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.1e-24 117.9 126 50.8
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 1.1e-24 117.9 120 50.8
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.1e-24 117.9 120 50.8
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 2.0e-24 117.1 120 51.7
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.6e-24 116.7 116 50.0
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 3.3e-24 116.3 113 54.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 4.4e-24 115.9 115 56.5
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-24 115.9 120 50.8
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 7.4e-24 115.2 119 50.4
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 7.4e-24 115.2 119 50.4
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 9.7e-24 114.8 110 50.0
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.8e-23 113.2 131 45.8
VMungo1127G0791 Vigna mungo HOM05D003169 ORTHO05D003700 3.7e-23 112.8 129 47.3
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 4.8e-23 112.5 143 42.0
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 6.3e-23 112.1 116 50.0
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 1.2e-21 107.8 97 59.8
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 5.9e-21 105.5 116 46.6
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 1.7e-20 104.0 117 48.7
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 5.5e-19 99.0 86 61.6
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 1.0e-17 94.7 110 44.5
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 4.5e-13 79.3 117 37.6
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 4.5e-13 79.3 117 37.6
Os04g0610200 Oryza sativa ssp. japonica HOM05D034463 ORTHO05D036998 6.5e-12 75.5 110 42.7
QL04p095737 Quercus lobata HOM05D003169 ORTHO05D003700 1.5e-11 74.3 122 39.3
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.6e-10 70.9 111 38.7
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.6e-10 70.9 118 36.4
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 2.1e-10 70.5 125 33.6
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 2.1e-10 70.5 122 32.8
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 6.1e-10 68.9 125 33.6
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 2.8e-07 60.1 64 48.4
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 4.8e-07 59.3 39 69.2
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 5.3e-06 55.8 36 63.9
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 7.0e-06 55.5 46 54.3


User provided reference genes

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