Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 0.0e+00 1147.1 612 100.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.4e-236 823.2 618 70.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.9e-231 805.4 639 67.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.0e-219 766.1 615 67.6
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.3e-206 722.2 663 60.8
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.0e-203 713.0 645 61.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 3.4e-203 712.2 660 61.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 7.5e-203 711.1 651 61.3
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 4.1e-201 705.3 630 62.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 5.0e-199 698.4 645 60.6
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.9e-198 696.4 648 61.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 4.7e-197 691.8 661 60.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.4e-196 690.3 677 58.6
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 4.0e-196 688.7 658 60.0
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 5.2e-196 688.3 677 58.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 8.9e-196 687.6 677 58.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.9e-196 687.6 646 59.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.2e-195 687.2 651 61.0
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.7e-194 683.3 654 59.2
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.2e-194 682.9 657 59.1
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.4e-193 680.2 643 59.4
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.9e-193 679.9 647 59.2
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 5.4e-193 678.3 642 59.5
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.7e-192 676.0 641 59.9
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.7e-192 676.0 650 59.1
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 7.8e-192 674.5 643 58.6
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 3.0e-191 672.5 656 57.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.5e-190 669.5 563 61.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.6e-189 666.8 646 56.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 8.1e-189 664.5 640 58.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 8.1e-189 664.5 633 58.9
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.1e-188 664.1 646 58.4
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.3e-188 662.9 649 58.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.3e-188 662.9 634 57.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.1e-188 662.5 650 58.3
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 8.9e-188 661.0 643 57.2
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 8.9e-188 661.0 650 56.8
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 5.8e-187 658.3 620 59.2
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 2.9e-186 656.0 652 56.7
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.8e-186 655.6 659 58.1
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.4e-185 653.7 646 57.9
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.4e-185 653.7 686 55.1
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.4e-185 652.9 659 57.1
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.2e-185 652.5 659 57.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 4.1e-185 652.1 646 57.7
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 7.1e-185 651.4 625 59.0
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.6e-184 650.2 663 56.7
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.1e-184 649.8 661 54.9
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-184 649.8 654 55.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.7e-184 649.4 639 56.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.7e-183 646.7 582 60.1
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 6.6e-183 644.8 639 56.2
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 8.6e-183 644.4 631 56.6
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.5e-182 642.9 659 56.3
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 3.3e-182 642.5 653 55.9
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.2e-181 640.6 627 56.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.6e-181 640.2 628 56.7
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.7e-181 638.6 613 60.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.1e-180 637.5 628 57.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-180 637.5 578 59.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.4e-180 636.3 616 57.8
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 4.0e-180 635.6 661 56.3
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.2e-179 634.0 655 55.1
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.4e-179 632.5 616 57.6
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.4e-179 632.1 646 55.7
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 5.8e-179 631.7 680 54.0
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 3.2e-177 625.9 617 57.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 1.2e-176 624.0 660 54.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.7e-176 622.9 650 54.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.5e-176 622.5 623 57.3
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.6e-176 622.1 641 55.5
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.0e-175 620.9 605 57.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.3e-175 619.8 623 56.3
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 3.0e-175 619.4 652 54.4
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 5.1e-175 618.6 652 54.1
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 6.6e-175 618.2 648 54.5
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.1e-174 617.5 652 54.3
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.3e-174 615.9 648 53.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 5.6e-174 615.1 605 57.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.8e-173 612.8 584 60.4
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 3.6e-173 612.5 637 53.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 6.2e-173 611.7 647 56.0
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.4e-172 609.8 640 53.8
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 3.1e-172 609.4 617 55.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 1.1e-169 600.9 535 61.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 3.2e-169 599.4 654 53.1
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 9.3e-169 597.8 638 55.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.6e-168 597.0 640 53.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 7.9e-168 594.7 638 53.9
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 6.7e-167 591.7 607 57.0
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 9.6e-166 587.8 628 53.8
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.4e-164 583.9 624 54.8
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 6.2e-157 558.5 588 57.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.0e-154 551.2 510 58.6
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-153 546.6 646 50.2
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.6e-149 533.9 647 50.7
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.0e-146 522.3 661 49.9
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.2e-145 519.6 644 49.5
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 4.6e-144 515.8 671 45.3
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 8.5e-138 495.0 653 49.5
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.7e-133 480.7 400 68.0
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 4.5e-131 472.6 567 45.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 5.5e-129 465.7 632 45.9
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.5e-118 431.0 349 66.8
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 8.2e-117 425.2 679 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.5e-113 414.5 643 42.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 9.8e-110 401.7 581 44.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 3.6e-104 383.3 616 42.7
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.0e-98 365.2 378 56.6
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-91 340.5 513 44.4
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.0e-90 336.3 392 52.0
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 8.6e-90 335.5 643 35.5
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.4e-84 318.2 249 67.5
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.2e-75 288.5 310 51.0
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.9e-71 272.3 278 55.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.2e-69 267.7 379 43.0
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.5e-67 260.4 352 45.2
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.1e-57 228.8 639 29.1
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.1e-56 224.6 725 28.3
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.9e-46 189.1 148 62.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.4e-45 186.4 178 59.6
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.1e-35 154.8 206 45.6
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 7.9e-35 152.9 177 48.6
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.0e-34 152.5 641 26.2
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-33 148.3 204 42.2
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 5.3e-31 140.2 97 70.1
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 6.9e-31 139.8 155 54.8
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.7e-29 135.2 111 58.6
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 5.0e-29 133.7 200 42.0
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-28 131.7 200 42.0
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.5e-28 131.3 132 52.3
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 4.2e-28 130.6 99 65.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 3.6e-27 127.5 126 50.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 6.7e-26 123.2 573 27.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.1e-25 122.5 146 51.4
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 4.1e-23 114.0 267 30.0
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.5e-12 78.2 148 39.9
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.2e-12 77.4 120 37.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 9.4e-12 76.3 67 59.7
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 9.4e-12 76.3 142 33.8
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 9.4e-12 76.3 142 33.8
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.1e-11 75.1 142 33.1
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 2.7e-11 74.7 142 33.1
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 2.7e-11 74.7 142 33.1
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 8.0e-11 73.2 142 32.4
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 8.8e-10 69.7 99 43.4
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.8e-08 64.7 44 61.4
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.1e-07 62.8 83 37.3
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 5.3e-07 60.5 55 49.1
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 5.3e-07 60.5 55 49.1


User provided reference genes

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