Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 5.4e-138 494.6 296 100.0
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 9.1e-53 211.5 316 51.9
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.0e-51 208.0 216 57.9
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 3.6e-49 199.5 246 52.8
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 4.6e-49 199.1 246 54.1
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 4.5e-44 182.6 237 52.7
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 5.3e-37 159.1 240 47.1
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 2.2e-35 153.7 239 46.0
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 1.1e-34 151.4 230 49.1
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 1.9e-34 150.6 249 45.4
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.7e-33 146.7 247 42.5
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.7e-33 146.7 247 42.5
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 3.6e-33 146.4 240 45.0
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 3.6e-33 146.4 211 50.7
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 4.7e-33 146.0 231 44.2
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 6.1e-33 145.6 250 42.8
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 6.1e-33 145.6 250 44.0
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 1.8e-32 144.1 247 42.1
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 1.8e-32 144.1 206 45.1
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 3.0e-32 143.3 214 47.7
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 4.0e-32 142.9 197 47.2
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.2e-32 142.5 247 42.1
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 6.7e-32 142.1 256 44.1
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 6.7e-32 142.1 244 47.5
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 8.8e-32 141.7 229 44.1
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 1.2e-31 141.4 233 43.8
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 1.5e-31 141.0 247 46.2
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 2.0e-31 140.6 252 43.3
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-31 140.6 247 42.1
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-31 140.6 247 42.1
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.0e-31 140.6 243 46.1
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.0e-31 140.6 198 47.0
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 2.6e-31 140.2 232 44.4
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 2.6e-31 140.2 221 48.9
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 2.6e-31 140.2 261 41.0
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 3.3e-31 139.8 244 47.5
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 7.5e-31 138.7 236 47.9
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 1.7e-30 137.5 218 48.2
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 3.7e-30 136.3 251 43.0
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 3.7e-30 136.3 206 46.1
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 6.3e-30 135.6 246 42.7
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 1.8e-29 134.0 250 43.6
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 5.3e-29 132.5 252 43.7
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 7.0e-29 132.1 262 39.7
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 9.1e-29 131.7 307 36.5
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 1.2e-28 131.3 235 41.7
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 4.5e-28 129.4 215 44.7
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 5.9e-28 129.0 246 42.3
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 1.0e-27 128.3 246 41.1
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 1.3e-27 127.9 239 44.4
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 1.7e-27 127.5 214 44.4
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 3.8e-27 126.3 214 45.8
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 8.5e-27 125.2 270 41.1
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 2.5e-26 123.6 236 44.1
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 2.5e-26 123.6 179 49.7
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 7.2e-26 122.1 135 54.8
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 7.2e-26 122.1 229 39.7
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 9.4e-26 121.7 273 37.7
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 1.6e-25 120.9 195 43.6
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.6e-25 120.9 250 44.0
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 1.6e-25 120.9 252 38.1
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 2.1e-25 120.6 229 42.8
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 3.6e-25 119.8 166 46.4
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 4.7e-25 119.4 230 42.6
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 4.7e-25 119.4 266 38.0
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 6.1e-25 119.0 241 41.9
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 8.0e-25 118.6 226 42.0
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 1.8e-24 117.5 241 41.1
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 1.8e-24 117.5 227 41.9
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 2.3e-24 117.1 208 42.8
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 4.0e-24 116.3 211 44.1
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 5.2e-24 115.9 242 40.9
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 5.2e-24 115.9 252 40.5
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 6.8e-24 115.5 212 42.5
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 6.8e-24 115.5 249 39.0
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 8.8e-24 115.2 213 42.3
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 1.2e-23 114.8 227 39.6
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 1.2e-23 114.8 246 37.0
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 2.0e-23 114.0 215 41.4
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 4.4e-23 112.8 231 40.7
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 5.7e-23 112.5 223 38.6
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 5.7e-23 112.5 261 39.8
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 5.7e-23 112.5 255 39.2
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 5.7e-23 112.5 263 40.3
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 7.5e-23 112.1 243 39.1
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 7.5e-23 112.1 243 39.1
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 9.8e-23 111.7 113 59.3
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 9.8e-23 111.7 276 37.0
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 9.8e-23 111.7 228 42.1
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 1.7e-22 110.9 236 40.3
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 2.8e-22 110.2 197 43.7
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 6.3e-22 109.0 193 43.0
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 8.3e-22 108.6 239 41.4
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 1.1e-21 108.2 157 47.1
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 1.1e-21 108.2 229 41.5
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.1e-21 108.2 177 47.5
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 1.4e-21 107.8 236 39.4
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 1.8e-21 107.5 245 38.8
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 9.1e-21 105.1 206 41.3
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 3.5e-20 103.2 226 40.7
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 5.9e-20 102.4 159 46.5
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.0e-19 101.7 250 36.0
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 5.0e-19 99.4 218 40.4
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 8.6e-19 98.6 167 44.3
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 8.6e-19 98.6 257 35.8
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 1.1e-18 98.2 92 59.8
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 1.5e-18 97.8 198 38.4
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 9.5e-18 95.1 404 30.0
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 1.2e-17 94.7 206 38.3
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 1.6e-17 94.4 167 41.9
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.6e-17 94.4 199 34.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 2.8e-17 93.6 268 35.8
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 2.8e-17 93.6 218 39.0
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 8.0e-17 92.0 263 34.2
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.8e-16 90.9 170 41.8
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 3.0e-16 90.1 253 36.0
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 4.0e-16 89.7 158 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 6.8e-16 89.0 132 47.7
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 3.4e-15 86.7 196 38.3
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 4.4e-15 86.3 146 44.5
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.7e-14 84.3 74 67.6
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 1.8e-13 80.9 230 34.3
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 1.2e-12 78.2 123 48.8
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 7.8e-12 75.5 68 61.8
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 1.0e-11 75.1 74 60.8
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 6.6e-11 72.4 155 39.4
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 6.6e-11 72.4 155 39.4
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 8.6e-11 72.0 91 50.5
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 1.1e-10 71.6 130 42.3
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 3.3e-10 70.1 67 59.7
Peaxi162Scf00057g10027 Petunia axillaris HOM05D005376 ORTHO05D006481 5.6e-10 69.3 149 38.3
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 1.0e-08 65.1 100 48.0
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.2e-07 61.6 56 62.5
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 1.5e-07 61.2 75 45.3
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 3.4e-07 60.1 54 55.6


User provided reference genes

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