Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11471 Selenicereus undatus HOM05D001502 ORTHO05D022407 7.2e-53 210.7 138 100.0
EL10Ac8g19542 Beta vulgaris HOM05D001502 ORTHO05D002950 2.3e-14 82.8 132 40.2
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 8.6e-14 80.9 58 63.8
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.1e-13 80.5 58 63.8
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.9e-13 79.7 61 59.0
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 9.5e-13 77.4 59 62.7
AUR62017207 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.1e-12 76.3 59 61.0
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 2.1e-12 76.3 58 60.3
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 2.1e-12 76.3 59 59.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.7e-12 75.1 60 56.7
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 4.7e-12 75.1 59 55.9
SEGI_22710 Sequoiadendron giganteum HOM05D001502 ORTHO05D050933 4.7e-12 75.1 58 60.3
AUR62010676 Chenopodium quinoa HOM05D001502 ORTHO05D002950 6.2e-12 74.7 59 57.6
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 6.2e-12 74.7 58 58.6
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 6.2e-12 74.7 61 57.4
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 8.1e-12 74.3 58 58.6
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.1e-11 73.9 62 51.6
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.1e-11 73.9 58 56.9
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.1e-11 73.9 58 58.6
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 1.4e-11 73.6 58 56.9
Lsat_1_v5_gn_6_87361 Lactuca sativa HOM05D001502 ORTHO05D002950 1.4e-11 73.6 64 59.4
Ah.12g056940 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.8e-11 73.2 54 61.1
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 1.8e-11 73.2 58 56.9
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 1.8e-11 73.2 58 56.9
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 2.3e-11 72.8 58 58.6
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 2.3e-11 72.8 58 58.6
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 3.1e-11 72.4 63 52.4
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 3.1e-11 72.4 63 50.8
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.1e-11 72.4 59 57.6
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 3.1e-11 72.4 58 55.2
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 4.0e-11 72.0 56 55.4
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 4.0e-11 72.0 56 57.1
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 5.2e-11 71.6 58 56.9
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 5.2e-11 71.6 58 56.9
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 6.8e-11 71.2 58 55.2
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 6.8e-11 71.2 58 56.9
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 6.8e-11 71.2 58 56.9
Cc08_g14720 Coffea canephora HOM05D001502 ORTHO05D022407 6.8e-11 71.2 56 55.4
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 6.8e-11 71.2 56 57.1
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 6.8e-11 71.2 58 51.7
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 8.9e-11 70.9 59 54.2
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 8.9e-11 70.9 55 54.5
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 8.9e-11 70.9 58 55.2
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 1.2e-10 70.5 58 55.2
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.2e-10 70.5 59 52.5
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.2e-10 70.5 59 52.5
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.2e-10 70.5 59 52.5
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 1.2e-10 70.5 66 53.0
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 1.2e-10 70.5 58 56.9
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.5e-10 70.1 55 56.4
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 1.5e-10 70.1 58 55.2
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.5e-10 70.1 58 53.4
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.5e-10 70.1 58 55.2
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 1.5e-10 70.1 55 54.5
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.0e-10 69.7 55 56.4
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.0e-10 69.7 55 52.7
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 2.0e-10 69.7 58 53.4
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.0e-10 69.7 58 53.4
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 2.0e-10 69.7 59 54.2
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 2.0e-10 69.7 59 49.2
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 2.0e-10 69.7 58 55.2
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 2.6e-10 69.3 58 55.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.4e-10 68.9 59 52.5
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 3.4e-10 68.9 63 52.4
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 55.2
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 51.7
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 51.7
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 51.7
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 55 52.7
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 4.4e-10 68.6 62 50.0
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 53.4
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 4.4e-10 68.6 59 52.5
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 53.4
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 53.4
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 4.4e-10 68.6 58 53.4
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 4.4e-10 68.6 55 56.4
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 7.5e-10 67.8 58 55.2
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 7.5e-10 67.8 58 50.0
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 7.5e-10 67.8 59 49.2
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 9.8e-10 67.4 58 53.4
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 9.8e-10 67.4 55 52.7
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 9.8e-10 67.4 58 53.4
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 9.8e-10 67.4 58 53.4
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 9.8e-10 67.4 59 50.8
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 1.3e-09 67.0 63 46.0
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 1.3e-09 67.0 58 48.3
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.3e-09 67.0 59 47.5
VMungo1215G0294 Vigna mungo HOM05D001502 ORTHO05D002950 1.3e-09 67.0 58 55.2
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 1.7e-09 66.6 55 50.9
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 1.7e-09 66.6 65 52.3
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 1.7e-09 66.6 61 54.1
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 1.7e-09 66.6 61 54.1
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.7e-09 66.6 63 49.2
Zm00001eb341940 Zea mays HOM05D001502 ORTHO05D002950 1.7e-09 66.6 57 49.1
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 2.2e-09 66.2 63 50.8
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 2.2e-09 66.2 55 50.9
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 2.2e-09 66.2 58 50.0
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.9e-09 65.9 58 53.4
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-09 65.9 55 50.9
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-09 65.9 55 50.9
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-09 65.9 55 50.9
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 2.9e-09 65.9 59 50.8
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 2.9e-09 65.9 55 47.3
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 3.7e-09 65.5 54 50.0
Cc06_g18970 Coffea canephora HOM05D001502 ORTHO05D002950 3.7e-09 65.5 54 55.6
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 3.7e-09 65.5 59 49.2
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 3.7e-09 65.5 59 50.8
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 3.7e-09 65.5 64 48.4
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 3.7e-09 65.5 58 53.4
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 4.9e-09 65.1 63 47.6
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 6.4e-09 64.7 59 47.5
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 6.4e-09 64.7 61 45.9
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 8.3e-09 64.3 62 48.4
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 8.3e-09 64.3 58 48.3
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 8.3e-09 64.3 58 48.3
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 8.3e-09 64.3 58 48.3
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 8.3e-09 64.3 59 49.2
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 8.3e-09 64.3 55 52.7
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 8.3e-09 64.3 63 47.6
Lsat_1_v5_gn_6_87381 Lactuca sativa HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 55.9
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 1.1e-08 63.9 54 57.4
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 1.4e-08 63.5 55 49.1
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 50.8
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 1.9e-08 63.2 63 50.8
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.9e-08 63.2 54 50.0
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 1.9e-08 63.2 58 44.8
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-08 62.8 55 52.7
Potri.003G127300 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.4e-08 62.8 55 49.1
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 3.2e-08 62.4 54 50.0
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 4.1e-08 62.0 54 46.3
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 4.1e-08 62.0 55 49.1
HanXRQChr17g0533651 Helianthus annuus HOM05D001502 ORTHO05D002950 5.4e-08 61.6 62 45.2
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 7.1e-08 61.2 58 50.0
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 7.1e-08 61.2 54 48.1
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 9.2e-08 60.8 54 46.3
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 9.2e-08 60.8 62 50.0
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 9.2e-08 60.8 56 44.6
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 1.2e-07 60.5 61 47.5
CAN.G774.30 Capsicum annuum HOM05D001502 ORTHO05D002950 1.2e-07 60.5 58 50.0
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 2.1e-07 59.7 54 48.1
Glyma.01G220100 Glycine max HOM05D001502 ORTHO05D002950 2.1e-07 59.7 58 44.8
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 2.7e-07 59.3 54 48.1
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 2.7e-07 59.3 55 45.5
Thhalv10027137m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 3.5e-07 58.9 58 44.8
ECA240G1190 Erigeron canadensis HOM05D001502 ORTHO05D002950 7.8e-07 57.8 58 55.2
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 7.8e-07 57.8 58 51.7
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 1.0e-06 57.4 58 39.7
Medtr6g464540 Medicago truncatula HOM05D001502 ORTHO05D002950 1.7e-06 56.6 55 54.5
AL4G16290 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 2.3e-06 56.2 62 38.7
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 2.3e-06 56.2 54 46.3
HanXRQChr17g0533661 Helianthus annuus HOM05D001502 ORTHO05D002950 3.0e-06 55.8 61 47.5
HanXRQChr03g0086701 Helianthus annuus HOM05D053249 ORTHO05D022407 3.9e-06 55.5 59 49.2
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 3.9e-06 55.5 62 45.2
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 3.9e-06 55.5 53 49.1
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 5.1e-06 55.1 62 35.5
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 5.1e-06 55.1 62 35.5
Carub.0004s0472 Capsella rubella HOM05D001502 ORTHO05D002950 5.1e-06 55.1 62 40.3
AT2G25120 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 6.6e-06 54.7 62 38.7
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 8.6e-06 54.3 43 53.5


User provided reference genes

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