Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 9.3e-43 176.4 85 100.0
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 4.5e-29 131.0 83 74.7
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 6.4e-28 127.1 82 70.7
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.4e-27 125.9 80 73.8
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 3.5e-26 121.3 82 72.0
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 6.0e-26 120.6 82 73.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 7.9e-26 120.2 83 66.3
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 1.0e-25 119.8 82 64.6
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.0e-25 119.8 82 67.1
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 2.3e-25 118.6 82 69.5
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 3.9e-25 117.9 82 69.5
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 3.9e-25 117.9 82 67.1
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 6.7e-25 117.1 82 68.3
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.7e-25 117.1 82 68.3
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.7e-25 117.1 82 68.3
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 6.7e-25 117.1 82 67.1
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 8.7e-25 116.7 82 67.1
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-24 116.3 81 66.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 1.5e-24 115.9 82 68.3
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 1.9e-24 115.5 83 68.7
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 1.9e-24 115.5 83 68.7
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.9e-24 115.5 82 63.4
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.5e-24 115.2 81 64.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 2.5e-24 115.2 82 62.2
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 64.6
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 64.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 64.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 64.6
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 63.4
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 3.3e-24 114.8 82 67.1
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 4.3e-24 114.4 82 63.4
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 7.4e-24 113.6 82 64.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 7.4e-24 113.6 82 68.3
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-23 112.5 81 64.2
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 1.6e-23 112.5 84 66.7
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 2.1e-23 112.1 80 66.2
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 2.1e-23 112.1 82 65.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.8e-23 111.7 82 62.2
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 2.8e-23 111.7 84 63.1
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 3.7e-23 111.3 82 63.4
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 4.8e-23 110.9 82 64.6
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 6.2e-23 110.5 82 59.8
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 6.2e-23 110.5 82 64.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 8.2e-23 110.2 82 62.2
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 8.2e-23 110.2 82 64.6
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 8.2e-23 110.2 82 62.2
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.4e-22 109.4 82 58.5
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.8e-22 109.0 82 62.2
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.8e-22 109.0 82 63.4
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 3.1e-22 108.2 82 62.2
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.1e-22 108.2 82 61.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 3.1e-22 108.2 81 63.0
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 5.3e-22 107.5 79 63.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 5.3e-22 107.5 82 62.2
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 6.9e-22 107.1 82 62.2
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 6.9e-22 107.1 82 59.8
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 9.0e-22 106.7 81 61.7
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 9.0e-22 106.7 82 61.0
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.2e-21 106.3 82 59.8
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 1.5e-21 105.9 82 61.0
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.5e-21 105.9 82 63.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 1.5e-21 105.9 82 62.2
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.5e-21 105.9 82 62.2
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 2.0e-21 105.5 82 63.4
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 2.0e-21 105.5 82 62.2
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.0e-21 105.5 80 63.8
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.0e-21 105.5 82 61.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 2.6e-21 105.1 82 62.2
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 2.6e-21 105.1 82 62.2
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 2.6e-21 105.1 81 61.7
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 3.4e-21 104.8 82 62.2
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 3.4e-21 104.8 82 62.2
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 3.4e-21 104.8 82 59.8
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 3.4e-21 104.8 82 62.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 3.4e-21 104.8 81 61.7
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 3.4e-21 104.8 82 62.2
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 4.5e-21 104.4 81 61.7
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 4.5e-21 104.4 81 61.7
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 5.8e-21 104.0 79 63.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.0e-20 103.2 82 61.0
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.7e-20 102.4 82 61.0
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.7e-20 102.4 82 56.1
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 2.2e-20 102.1 82 61.0
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 2.2e-20 102.1 82 61.0
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 2.9e-20 101.7 82 61.0
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 4.9e-20 100.9 82 61.0
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.4e-19 99.4 82 59.8
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.9e-19 99.0 83 60.2
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 4.2e-19 97.8 82 58.5
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 4.2e-19 97.8 82 58.5
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 4.2e-19 97.8 82 56.1
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-18 96.3 79 58.2
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.9e-17 91.3 84 51.2
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-15 85.1 81 54.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.3e-15 84.0 92 48.9
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 8.2e-15 83.6 99 41.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.3e-14 80.9 89 42.7
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.2e-13 79.7 82 48.8
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.2e-12 75.5 83 44.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.8e-12 74.7 75 52.0
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 4.6e-10 67.8 81 42.0
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.8e-09 65.9 52 57.7
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.3e-09 65.5 56 51.8
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.8e-09 63.5 58 50.0
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.3e-07 59.7 59 50.8
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 6.9e-06 53.9 48 45.8


User provided reference genes

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