Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10107 Selenicereus undatus HOM05D005705 ORTHO05D007152 1.5e-197 692.6 334 100.0
MSTRG.4614 Avicennia marina HOM05D005705 ORTHO05D007152 9.8e-96 354.4 325 58.5
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 2.2e-95 353.2 323 57.6
CANSAT80G2532 Cannabis sativa HOM05D005705 ORTHO05D007152 2.4e-94 349.7 319 57.1
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 2.4e-94 349.7 324 57.4
Atru.chr6.1874 Acer truncatum HOM05D005705 ORTHO05D007152 1.2e-93 347.4 319 56.4
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 5.9e-93 345.1 322 56.5
Solyc03g097550.3 Solanum lycopersicum HOM05D005705 ORTHO05D007152 1.0e-92 344.4 321 56.4
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 1.7e-92 343.6 316 57.3
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 2.2e-92 343.2 323 55.7
Sopen03g028300 Solanum pennellii HOM05D005705 ORTHO05D007152 2.2e-92 343.2 321 56.1
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 8.5e-92 341.3 329 55.3
CAN.G732.1 Capsicum annuum HOM05D005705 ORTHO05D007152 1.9e-91 340.1 322 55.9
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 1.9e-91 340.1 310 55.2
Lalb_Chr08g0237371 Lupinus albus HOM05D005705 ORTHO05D007152 4.2e-91 339.0 321 55.8
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 7.2e-91 338.2 312 58.3
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 7.2e-91 338.2 317 54.9
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 9.4e-91 337.8 313 57.2
VMungo1309G0782 Vigna mungo HOM05D005705 ORTHO05D007152 1.2e-90 337.4 318 56.0
Ciclev10031733m.g Citrus clementina HOM05D005705 ORTHO05D007152 2.1e-90 336.7 317 56.5
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 2.1e-90 336.7 319 55.8
CiPaw.11G003500 Carya illinoinensis HOM05D005705 ORTHO05D007152 2.7e-90 336.3 321 55.1
Gorai.003G119300 Gossypium raimondii HOM05D005705 ORTHO05D007152 3.6e-90 335.9 317 54.9
Potri.015G101300 Populus trichocarpa HOM05D005705 ORTHO05D007152 1.0e-89 334.3 308 54.2
Eucgr.K02692 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.4e-89 334.0 318 55.7
arahy.Tifrunner.gnm1.ann1.5ZS0BP Arachis hypogaea HOM05D005705 ORTHO05D007152 1.8e-89 333.6 324 54.6
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 2.3e-89 333.2 321 54.5
Gohir.D03G113100 Gossypium hirsutum HOM05D005705 ORTHO05D007152 3.0e-89 332.8 317 54.6
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 4.0e-89 332.4 319 55.2
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 4.0e-89 332.4 321 54.8
Thecc.03G135500 Theobroma cacao HOM05D005705 ORTHO05D007152 4.0e-89 332.4 319 54.2
Ca_16064_v3 Cicer arietinum L. HOM05D005705 ORTHO05D007152 6.8e-89 331.6 319 54.2
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 2.0e-88 330.1 320 54.7
Phvul.009G162600 Phaseolus vulgaris HOM05D005705 ORTHO05D007152 2.6e-88 329.7 320 55.3
Lj1g0017194 Lotus japonicus HOM05D005705 ORTHO05D007152 1.3e-87 327.4 320 53.8
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 2.8e-87 326.2 317 53.3
MD06G1136700 Malus domestica HOM05D005705 ORTHO05D007152 3.7e-87 325.9 323 53.9
Psat5g053040 Pisum sativum HOM05D005705 ORTHO05D007152 3.7e-87 325.9 319 53.0
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 8.3e-87 324.7 319 53.9
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 1.1e-86 324.3 318 53.5
TWI14G0152 Tripterygium wilfordii HOM05D005705 ORTHO05D007152 9.2e-86 321.2 321 51.4
FAN13G0195 Fragaria x ananassa HOM05D005705 ORTHO05D007152 4.5e-85 318.9 327 52.6
Lsat_1_v5_gn_1_32681 Lactuca sativa HOM05D005705 ORTHO05D007152 7.7e-85 318.2 318 52.8
FAN18G0862 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.0e-84 317.8 331 52.3
arahy.Tifrunner.gnm1.ann1.U15GQW Arachis hypogaea HOM05D005705 ORTHO05D007152 2.3e-84 316.6 360 48.6
FAN08G2466 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.5e-83 313.2 334 51.2
HanXRQChr02g0034161 Helianthus annuus HOM05D005705 ORTHO05D007152 4.3e-83 312.4 342 50.9
Eucgr.B00082 Eucalyptus grandis HOM05D005705 ORTHO05D007152 5.6e-83 312.0 314 52.9
ECA247G0704 Erigeron canadensis HOM05D005705 ORTHO05D007152 9.5e-83 311.2 320 51.6
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 1.0e-81 307.8 333 51.4
Eucgr.F01610 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.0e-81 307.8 310 52.9
ClCG06G018130 Citrullus lanatus HOM05D005705 ORTHO05D007152 1.8e-81 307.0 325 51.4
Ah.11g046430 Amaranthus hybridus HOM05D005705 ORTHO05D007152 4.0e-81 305.8 360 47.8
CSS0038740 Camellia sinensis var. sinensis HOM05D005705 ORTHO05D007152 1.2e-80 304.3 322 54.0
FAN04G2238 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.0e-80 303.5 338 50.3
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 3.4e-80 302.8 314 52.5
vmacro19145 Vaccinium macrocarpon HOM05D005705 ORTHO05D007152 4.4e-80 302.4 352 50.3
Zm00001eb241970 Zea mays HOM05D005705 ORTHO05D007152 7.5e-80 301.6 317 50.2
Sed0013194 Sechium edule HOM05D005705 ORTHO05D007152 1.7e-79 300.4 325 50.8
Eucgr.K02689 Eucalyptus grandis HOM05D005705 ORTHO05D007152 2.9e-79 299.7 314 52.2
AUR62029555 Chenopodium quinoa HOM05D005705 ORTHO05D007152 6.4e-79 298.5 196 73.5
AUR62034819 Chenopodium quinoa HOM05D005705 ORTHO05D007152 8.3e-79 298.1 196 73.5
PGR044G0296 Punica granatum HOM05D005705 ORTHO05D007152 4.1e-78 295.8 329 49.2
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 7.0e-78 295.0 331 49.2
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 9.2e-78 294.7 331 49.2
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 1.6e-77 293.9 334 48.2
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 2.0e-77 293.5 331 48.6
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 2.7e-77 293.1 322 49.4
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 2.7e-77 293.1 322 49.4
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 2.7e-77 293.1 322 49.4
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 3.5e-77 292.7 321 48.6
TPR.G35256 Trifolium pratense HOM05D005705 ORTHO05D007152 4.6e-77 292.4 319 48.3
Sc22g0003610 Simmondsia chinensis HOM05D005705 ORTHO05D007152 5.9e-77 292.0 287 56.1
Gohir.A03G053840 Gossypium hirsutum HOM05D005705 ORTHO05D007152 7.8e-77 291.6 317 50.2
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 1.3e-76 290.8 329 48.6
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 1.7e-76 290.4 319 49.5
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 2.3e-76 290.0 325 49.5
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 1.9e-75 287.0 322 48.1
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 1.9e-75 287.0 318 49.7
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 4.3e-75 285.8 321 48.3
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 1.2e-74 284.3 321 47.7
ECA247G2912 Erigeron canadensis HOM05D005705 ORTHO05D007152 1.2e-74 284.3 325 49.5
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 1.6e-74 283.9 325 48.9
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 2.1e-74 283.5 321 47.7
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 2.8e-74 283.1 323 47.4
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 2.8e-74 283.1 321 47.4
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 2.8e-74 283.1 318 47.5
QL10p001835 Quercus lobata HOM05D005705 ORTHO05D007152 4.7e-74 282.3 390 46.2
Prupe.5G146600 Prunus persica HOM05D005705 ORTHO05D007152 8.0e-74 281.6 319 48.6
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.1e-73 279.6 300 51.3
Lj5A92G46 Lonicera japonica HOM05D005705 ORTHO05D007152 1.9e-70 270.4 310 51.9
Nn4g22223 Nelumbo nucifera HOM05D005705 ORTHO05D007152 4.1e-70 269.2 195 67.7
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 2.3e-68 263.5 286 50.0
Eucgr.K02697 Eucalyptus grandis HOM05D005705 ORTHO05D007152 9.5e-67 258.1 194 65.5
Oeu061128.1 Olea europaea HOM05D005705 ORTHO05D007152 4.7e-66 255.8 330 46.4
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 1.2e-64 251.1 294 50.3
SGA_v2.0_scaffold37G14637 Striga asiatica HOM05D005705 ORTHO05D007152 5.8e-64 248.8 196 62.8
Hma1.2p1_0168F.1_g074310 Hydrangea macrophylla HOM05D005705 ORTHO05D007152 8.3e-63 245.0 289 49.5
Actinidia18330 Actinidia chinensis HOM05D005705 ORTHO05D007152 1.9e-62 243.8 254 53.9
RcHm_v2.0_Chr7g0189401 Rosa chinensis HOM05D005705 ORTHO05D007152 4.6e-61 239.2 318 44.3
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 6.6e-60 235.3 404 37.4
TAR374G1739 Trochodendron aralioides HOM05D005705 ORTHO05D007152 9.5e-59 231.5 237 55.3
Haze_07188 Corylus avellana HOM05D005705 ORTHO05D007152 1.1e-57 228.0 315 44.4
Pp3c10_5680 Physcomitrium patens HOM05D005705 ORTHO05D007152 1.8e-57 227.3 427 35.1
Pp3c10_5730 Physcomitrium patens HOM05D005705 ORTHO05D007152 6.8e-57 225.3 426 35.0
CDE02G4520 Ceratophyllum demersum HOM05D005705 ORTHO05D007152 4.1e-54 216.1 268 48.1
Duzib084G0308 Durio zibethinus HOM05D005705 ORTHO05D007152 5.4e-54 215.7 319 40.1
Gohir.D03G113075 Gossypium hirsutum HOM05D005705 ORTHO05D007152 7.8e-53 211.8 154 65.6
HPP92_015136 Vanilla planifolia HOM05D005705 ORTHO05D007152 1.0e-52 211.5 319 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2453 Anthoceros agrestis HOM05D005705 ORTHO05D007152 3.1e-49 199.9 265 45.3
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 2.0e-48 197.2 211 53.6
MELO3C026185.2 Cucumis melo HOM05D005705 ORTHO05D007152 6.0e-45 185.7 281 43.1
FvH4_5g08961 Fragaria vesca HOM05D005705 ORTHO05D007152 1.3e-44 184.5 208 48.6
CBR_g48327 Chara braunii HOM05D005705 ORTHO05D007152 5.4e-38 162.5 258 41.5
PGSC0003DMG400031733 Solanum tuberosum HOM05D005705 ORTHO05D007152 2.1e-29 134.0 165 47.3
Gohir.A03G053960 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.8e-28 131.0 166 44.6
Eucgr.K02687 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.1e-25 121.7 95 58.9
Cpa.g.sc4.148 Carica papaya HOM05D005705 ORTHO05D007152 2.6e-24 117.1 88 64.8
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 4.9e-23 112.8 346 27.2
Cpa.g.sc4.145 Carica papaya HOM05D005705 ORTHO05D007152 1.6e-21 107.8 78 62.8
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.7e-21 107.1 359 27.6
Cre17.g702400 Chlamydomonas reinhardtii HOM05D005705 ORTHO05D007152 3.5e-21 106.7 236 33.5
Haze_27069 Corylus avellana HOM05D005705 ORTHO05D007152 3.9e-20 103.2 218 31.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 6.7e-20 102.4 55 81.8
AagrBONN_evm.TU.Sc2ySwM_368.1098 Anthoceros agrestis HOM05D005705 ORTHO05D007152 8.7e-12 75.5 48 70.8
Cpa.g.sc4.149 Carica papaya HOM05D005705 ORTHO05D007152 2.6e-08 63.9 38 68.4
MCO02G106 Micromonas commoda HOM05D005705 ORTHO05D007152 4.5e-08 63.2 54 59.3
CAN.G1841.1 Capsicum annuum HOM05D000176 ORTHO05D014553 6.5e-07 59.3 38 65.8
Os02g0512300 Oryza sativa ssp. japonica HOM05D005705 ORTHO05D007152 1.4e-06 58.2 33 72.7
MCO05G046 Micromonas commoda HOM05D005705 ORTHO05D007152 1.9e-06 57.8 114 37.7


User provided reference genes

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