Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.9e-264 915.2 438 100.0
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.0e-217 757.7 392 91.8
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 2.5e-192 675.6 393 79.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.4e-190 669.8 390 79.5
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.2e-189 666.8 392 78.3
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.0e-189 666.0 391 80.1
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.2e-188 662.5 390 76.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 3.2e-187 658.7 391 77.7
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.4e-187 657.9 391 79.0
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.3e-185 653.3 390 76.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 5.1e-185 651.4 391 76.7
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.3e-184 648.3 391 75.7
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.3e-184 647.5 391 75.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 7.3e-184 647.5 391 75.7
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 9.5e-184 647.1 390 75.9
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 3.6e-183 645.2 391 76.2
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 6.2e-183 644.4 391 76.2
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 6.8e-182 641.0 390 77.2
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 6.8e-182 641.0 391 75.7
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.6e-181 639.0 390 76.4
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 4.4e-181 638.3 390 76.7
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.4e-181 638.3 389 75.8
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.7e-180 636.3 384 75.5
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 6.4e-180 634.4 393 75.1
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 8.4e-180 634.0 401 74.1
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 8.4e-180 634.0 391 74.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 9.2e-179 630.6 391 75.2
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 9.2e-179 630.6 390 74.9
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.6e-178 629.8 390 74.9
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.1e-178 629.4 390 74.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.1e-178 629.4 389 74.0
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.1e-178 629.4 389 74.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 2.7e-178 629.0 392 73.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 4.6e-178 628.2 390 74.6
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 7.8e-178 627.5 387 73.9
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.0e-177 627.1 389 74.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.3e-177 626.7 392 74.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 3.9e-177 625.2 389 73.5
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 3.9e-177 625.2 387 74.2
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.6e-177 624.4 389 76.1
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 8.7e-177 624.0 392 72.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.7e-177 624.0 391 75.2
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 8.7e-177 624.0 397 72.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.5e-176 623.2 393 73.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 9.6e-176 620.5 390 73.1
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.6e-175 619.8 394 72.6
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 3.6e-175 618.6 390 73.1
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.7e-175 618.2 391 71.4
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 6.2e-175 617.8 392 73.5
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 8.1e-175 617.5 391 72.4
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.8e-174 616.3 390 72.3
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.1e-174 615.5 389 75.1
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.1e-174 615.5 391 72.4
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 4.0e-174 615.1 389 75.1
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 4.0e-174 615.1 391 72.1
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 9.0e-174 614.0 392 72.7
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.5e-173 613.2 390 71.8
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.0e-173 612.8 390 72.3
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.4e-173 611.7 391 70.8
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 4.4e-173 611.7 395 72.4
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 7.6e-173 610.9 388 71.6
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 9.9e-173 610.5 392 72.2
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.3e-172 610.1 454 65.2
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.7e-172 609.8 389 71.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.7e-172 609.8 391 71.1
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.9e-172 609.0 393 70.2
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 3.8e-172 608.6 390 72.1
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 6.4e-172 607.8 387 72.1
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 6.4e-172 607.8 392 71.9
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 6.4e-172 607.8 375 74.9
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.4e-171 606.7 390 71.5
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.9e-171 606.3 398 71.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.0e-169 599.0 389 71.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 3.0e-169 599.0 393 70.2
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 5.1e-169 598.2 389 70.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.1e-169 598.2 391 70.1
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 5.1e-169 598.2 390 72.3
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.3e-168 595.5 387 71.3
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 9.6e-168 594.0 384 71.4
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.6e-167 593.2 389 71.5
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.1e-167 592.8 403 68.7
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 4.8e-167 591.7 387 70.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 4.8e-167 591.7 388 70.1
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.4e-166 589.3 390 70.5
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-166 589.3 390 70.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.1e-166 589.0 389 70.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 6.9e-166 587.8 391 69.6
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 6.9e-166 587.8 390 70.5
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.2e-165 587.0 390 71.5
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.6e-165 585.9 388 69.3
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 5.8e-165 584.7 393 70.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 9.9e-165 583.9 389 69.9
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 9.9e-165 583.9 388 69.1
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.7e-164 583.2 393 69.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 4.9e-164 581.6 388 69.1
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.1e-163 580.5 419 65.2
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.1e-163 580.5 401 69.3
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 5.4e-163 578.2 438 63.9
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 6.0e-162 574.7 390 67.9
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.0e-162 574.7 366 74.3
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 3.0e-161 572.4 391 69.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.1e-159 566.2 364 72.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 4.0e-158 562.0 421 64.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.7e-156 556.6 395 65.8
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 8.4e-156 554.3 389 66.8
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.1e-154 549.7 390 67.2
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 7.9e-154 547.7 424 63.2
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.3e-153 546.2 389 63.5
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.8e-150 536.6 389 64.8
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 8.4e-148 527.7 379 65.2
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 9.3e-147 524.2 388 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.2e-146 523.9 392 63.0
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 3.5e-146 522.3 388 64.2
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 5.1e-145 518.5 326 73.9
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.9e-144 516.5 385 63.1
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.5e-144 516.2 398 60.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.9e-137 492.3 431 56.4
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.5e-133 480.3 311 69.8
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.3e-129 466.5 390 59.7
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 5.7e-128 461.8 403 57.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.9e-123 446.8 292 71.6
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.1e-110 402.9 391 56.0
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.5e-104 384.0 400 50.0
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.6e-101 374.0 236 73.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.0e-100 371.3 362 53.3
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-98 363.6 268 64.6
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.3e-95 352.1 247 66.4
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-90 335.5 239 66.1
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.9e-89 331.6 401 44.1
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 3.9e-84 316.2 421 42.3
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.5e-83 314.3 402 42.5
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-81 307.8 214 67.8
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-75 288.1 183 70.5
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 8.9e-73 278.5 170 72.9
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 8.9e-65 251.9 172 69.8
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.8e-44 184.5 93 86.0
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 3.9e-44 183.3 492 28.3
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.5e-35 154.8 151 58.3
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 6.5e-31 139.4 109 62.4
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 8.4e-31 139.0 105 63.8
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 1.0e-28 132.1 78 76.9
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 3.9e-28 130.2 91 68.1
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.9e-22 111.3 75 68.0
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-15 88.2 163 34.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.2e-13 82.0 45 82.2
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.0e-12 79.0 45 80.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.0e-12 79.0 157 33.8
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 3.3e-11 73.9 40 80.0
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 5.7e-11 73.2 61 62.3
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.0e-07 62.4 30 76.7
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 2.5e-06 57.8 33 81.8
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 7.2e-06 56.2 29 72.4


User provided reference genes

Program Settings