Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 0.0e+00 1232.6 666 100.0
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.0e-125 453.0 795 43.4
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.2e-121 441.4 783 44.7
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 7.4e-111 405.6 810 40.0
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-86 325.1 704 43.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-86 325.1 704 43.8
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.1e-85 320.1 438 49.3
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.1e-82 312.0 457 45.1
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 4.7e-81 306.6 452 46.2
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 3.9e-80 303.5 432 48.6
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 5.1e-80 303.1 425 49.9
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.5e-79 301.6 439 48.5
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 5.7e-79 299.7 438 46.3
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 7.4e-79 299.3 436 47.7
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.8e-78 296.6 406 47.5
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.4e-77 294.3 408 46.6
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.4e-77 294.3 844 33.8
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 4.1e-77 293.5 431 47.3
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 7.0e-77 292.7 434 45.9
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.5e-76 291.6 469 44.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 7.7e-76 289.3 457 44.4
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.7e-75 288.1 428 47.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.7e-75 288.1 416 47.1
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 3.8e-75 287.0 435 45.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.1e-74 285.4 438 44.3
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.5e-74 284.3 442 46.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.2e-73 282.0 429 44.5
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 4.7e-73 280.0 432 46.1
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.8e-72 278.1 427 46.1
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 3.0e-72 277.3 429 44.3
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 5.2e-72 276.6 429 45.9
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.1e-71 275.4 453 44.4
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.1e-71 275.4 406 46.1
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.0e-71 274.6 429 43.6
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 4.4e-71 273.5 413 45.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 9.7e-71 272.3 674 41.8
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.3e-70 271.9 437 45.3
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 2.2e-70 271.2 423 44.0
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 2.2e-70 271.2 414 46.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.4e-69 268.5 430 44.0
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.4e-69 267.7 452 42.3
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.4e-69 267.7 432 44.9
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 5.3e-69 266.5 432 43.5
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 7.0e-69 266.2 431 44.1
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.2e-68 265.4 427 45.7
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.2e-68 265.4 425 43.5
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 6.5e-67 259.6 377 46.2
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 3.2e-66 257.3 416 43.3
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.2e-66 256.1 477 41.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 7.2e-66 256.1 297 50.8
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.6e-65 255.0 483 41.2
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 2.1e-65 254.6 432 45.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.7e-65 254.2 433 44.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.6e-65 253.8 446 44.2
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.7e-65 253.4 460 41.7
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-64 251.9 445 41.6
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.4e-64 251.9 440 42.5
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 2.3e-64 251.1 436 42.4
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 3.0e-64 250.8 538 37.2
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 6.7e-64 249.6 418 42.6
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 8.8e-64 249.2 304 50.0
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.5e-63 248.4 472 40.5
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.3e-63 247.3 471 40.6
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.1e-61 242.3 786 36.0
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.4e-61 241.9 440 41.8
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.8e-61 241.5 431 43.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 5.3e-61 240.0 447 43.4
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.7e-60 237.7 452 41.6
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 5.9e-60 236.5 482 39.6
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.2e-59 234.6 353 46.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.2e-59 234.6 353 46.5
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.8e-59 233.8 442 39.6
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 6.5e-59 233.0 423 41.6
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 8.5e-59 232.6 438 42.7
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.5e-58 231.9 476 38.4
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.5e-58 231.9 425 40.5
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.5e-58 231.9 437 41.4
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 9.4e-58 229.2 494 36.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 5.2e-56 223.4 468 40.0
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 6.8e-56 223.0 446 42.4
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.5e-55 221.9 355 42.3
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 2.0e-55 221.5 409 42.1
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.6e-55 221.1 387 40.3
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 9.8e-55 219.2 392 40.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.7e-54 217.2 467 41.1
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 3.7e-54 217.2 427 41.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 4.8e-54 216.9 419 40.6
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 4.8e-54 216.9 315 46.0
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 6.3e-54 216.5 395 41.5
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 8.3e-54 216.1 451 39.9
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.1e-53 215.7 384 39.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.4e-53 215.3 368 42.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 4.1e-53 213.8 434 39.6
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 5.4e-53 213.4 380 40.8
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 7.0e-53 213.0 542 34.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 7.0e-53 213.0 357 41.7
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.7e-52 211.1 395 40.5
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 2.7e-52 211.1 440 40.9
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 4.5e-52 210.3 458 39.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 5.9e-52 209.9 243 49.4
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 5.0e-51 206.8 368 40.8
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.6e-51 206.5 348 41.4
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.5e-50 205.3 391 42.2
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.5e-50 205.3 301 47.8
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 4.2e-50 203.8 343 41.7
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 5.5e-50 203.4 391 37.9
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.2e-50 203.0 323 42.4
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.7e-49 200.3 444 37.8
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.7e-49 200.3 461 39.3
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 8.0e-49 199.5 383 37.6
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 8.0e-49 199.5 383 37.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.0e-48 197.6 385 38.7
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.0e-48 197.2 374 38.2
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.2e-47 195.7 268 45.9
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.6e-47 194.5 454 37.4
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.8e-45 188.3 367 36.8
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 9.2e-45 186.0 134 68.7
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.6e-44 185.3 290 42.1
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.5e-44 184.1 278 42.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.0e-43 182.6 368 37.0
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.3e-43 182.2 169 51.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 2.3e-43 181.4 717 34.9
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 6.6e-43 179.9 144 63.2
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.5e-42 177.9 244 43.9
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 3.3e-42 177.6 180 52.2
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.0e-40 172.6 130 61.5
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.3e-40 171.4 120 70.8
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 4.4e-39 167.2 342 36.3
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-38 165.6 353 35.7
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.7e-38 165.2 465 34.6
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 4.1e-37 160.6 472 33.5
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.3e-35 155.6 126 55.6
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.9e-34 151.8 313 38.7
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.1e-33 148.3 217 41.9
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 9.8e-31 139.4 147 49.7
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.7e-30 138.7 128 54.7
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 3.7e-30 137.5 142 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.9e-29 135.2 246 37.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 7.0e-29 133.3 127 53.5
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.9e-27 127.5 431 30.2
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.9e-22 111.3 99 59.6
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 4.0e-16 90.9 66 63.6
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 4.0e-16 90.9 66 63.6
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 8.9e-16 89.7 334 31.1
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.3e-14 85.9 71 54.9
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.2e-09 69.3 131 35.1
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.4e-08 65.1 108 32.4
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 5.8e-07 60.5 102 36.3
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 4.9e-06 57.4 45 57.8


User provided reference genes

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