Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09555 Selenicereus undatus HOM05D000921 ORTHO05D004153 0.0e+00 2848.2 1440 100.0
AUR62011967 Chenopodium quinoa HOM05D000921 ORTHO05D004153 0.0e+00 1459.9 1452 54.9
AUR62032279 Chenopodium quinoa HOM05D000921 ORTHO05D004153 0.0e+00 1445.3 1451 54.3
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 0.0e+00 1176.0 1601 45.1
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 0.0e+00 1171.4 1624 44.8
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 0.0e+00 1170.2 1594 45.5
Sc17g0001140 Simmondsia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1164.1 1565 44.9
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 0.0e+00 1163.3 1538 45.5
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 0.0e+00 1157.1 1592 44.4
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 0.0e+00 1155.2 1574 44.3
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 0.0e+00 1151.0 1616 44.5
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 0.0e+00 1150.2 1607 43.8
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 0.0e+00 1142.9 1596 44.2
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1141.3 1594 44.6
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 0.0e+00 1139.0 1609 43.4
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 0.0e+00 1138.6 1606 43.5
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 0.0e+00 1137.1 1610 43.4
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 0.0e+00 1136.3 1615 43.8
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 0.0e+00 1135.9 1608 44.0
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 0.0e+00 1135.6 1610 43.4
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 0.0e+00 1134.8 1612 43.2
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 0.0e+00 1133.6 1608 44.0
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 0.0e+00 1133.2 1613 43.0
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 0.0e+00 1132.9 1614 43.6
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 0.0e+00 1131.3 1615 43.8
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 0.0e+00 1130.9 1608 43.5
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1130.5 1614 43.2
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 0.0e+00 1130.2 1613 42.9
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 0.0e+00 1130.2 1609 43.1
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 0.0e+00 1130.2 1613 43.1
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1128.2 1607 43.3
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 0.0e+00 1127.5 1607 43.2
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 0.0e+00 1127.5 1602 43.6
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 0.0e+00 1124.0 1613 43.8
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1122.5 1613 43.5
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 0.0e+00 1122.5 1611 43.3
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1122.5 1608 43.8
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 0.0e+00 1120.1 1620 42.3
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 0.0e+00 1120.1 1609 43.9
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 0.0e+00 1120.1 1615 43.2
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 0.0e+00 1119.8 1616 43.3
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 0.0e+00 1118.6 1611 42.6
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 0.0e+00 1117.4 1618 43.0
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1115.5 1594 43.1
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 0.0e+00 1114.8 1598 43.6
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1114.0 1612 43.4
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 0.0e+00 1112.8 1594 44.1
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 0.0e+00 1112.1 1620 43.3
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 0.0e+00 1111.3 1625 42.6
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 0.0e+00 1111.3 1608 42.8
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1110.1 1617 43.6
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1109.7 1612 43.3
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 0.0e+00 1109.0 1617 42.7
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 0.0e+00 1109.0 1613 43.2
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1109.0 1608 42.7
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 0.0e+00 1109.0 1612 42.9
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 0.0e+00 1108.6 1617 43.1
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1108.2 1617 43.5
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 0.0e+00 1106.3 1614 43.2
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 0.0e+00 1105.1 1614 42.7
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1103.2 1610 42.9
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 0.0e+00 1099.7 1606 42.8
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 0.0e+00 1099.7 1614 43.2
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 0.0e+00 1099.7 1611 43.1
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 0.0e+00 1099.3 1614 42.9
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 0.0e+00 1099.0 1612 42.9
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 0.0e+00 1098.6 1615 43.0
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 0.0e+00 1097.8 1579 43.1
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 0.0e+00 1097.4 1625 42.5
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 0.0e+00 1095.9 1623 42.5
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 0.0e+00 1095.9 1610 42.9
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 0.0e+00 1095.5 1615 42.0
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 0.0e+00 1095.1 1616 42.4
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 0.0e+00 1094.3 1615 42.1
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 0.0e+00 1093.6 1614 42.5
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1093.2 1613 42.3
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 0.0e+00 1092.0 1606 42.7
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 0.0e+00 1090.5 1580 42.7
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 0.0e+00 1089.3 1607 42.8
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 0.0e+00 1085.5 1610 42.4
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 0.0e+00 1081.6 1586 42.4
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 0.0e+00 1080.5 1611 42.0
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 0.0e+00 1080.5 1607 42.2
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 0.0e+00 1080.5 1607 42.2
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 0.0e+00 1078.5 1609 42.1
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 0.0e+00 1078.5 1613 41.6
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 0.0e+00 1075.1 1591 43.2
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 9.9e-312 1074.3 1609 42.0
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 9.9e-312 1073.9 1609 42.0
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 6.9e-311 1071.2 1616 41.7
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 1.2e-310 1070.5 1609 42.0
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 1.5e-310 1070.1 1601 42.5
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 3.3e-310 1068.9 1580 42.2
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 4.3e-310 1068.5 1609 41.9
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 7.5e-310 1067.8 1618 41.3
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 6.3e-309 1064.7 1615 41.9
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 1.4e-308 1063.5 1609 41.7
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.8e-308 1063.1 1601 41.3
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.8e-308 1063.1 1601 41.3
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 4.1e-308 1062.0 1538 43.4
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 9.1e-308 1060.8 1606 41.8
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 7.7e-307 1057.7 1610 41.9
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 2.9e-306 1055.8 1591 41.6
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.2e-304 1050.4 1596 41.5
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 1.2e-304 1050.4 1598 41.4
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 1.0e-303 1047.3 1601 41.0
Gohir.A08G187300 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.0e-303 1047.3 1567 41.5
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 6.8e-303 1044.6 1571 41.1
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 3.4e-302 1042.3 1608 40.4
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 4.4e-302 1042.0 1608 41.3
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 7.5e-302 1041.2 1515 42.7
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 1.3e-301 1040.4 1627 40.8
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 2.2e-301 1039.6 1617 41.2
BraA03t12271Z Brassica rapa HOM05D000921 ORTHO05D004153 5.4e-300 1035.0 1582 41.4
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 4.5e-299 1031.9 1596 40.3
A03p30920 Brassica napus HOM05D000921 ORTHO05D004153 1.7e-298 1030.0 1583 41.3
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 3.8e-298 1028.9 1613 40.7
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 3.8e-298 1028.9 1613 40.7
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 8.5e-298 1027.7 1570 40.9
C03p37700 Brassica napus HOM05D000921 ORTHO05D004153 1.6e-296 1023.5 1586 41.2
BolC3t16059H Brassica oleracea HOM05D000921 ORTHO05D004153 1.6e-296 1023.5 1586 41.2
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 8.0e-296 1021.1 1590 39.9
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 8.0e-296 1021.1 1590 41.2
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 4.0e-295 1018.8 1603 40.6
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 4.1e-292 1008.8 1627 39.3
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 7.0e-292 1008.1 1582 41.1
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 7.0e-292 1008.1 1593 41.4
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 2.3e-287 993.0 1525 40.7
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 3.4e-286 989.2 1666 38.5
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 1.1e-281 974.2 1599 39.6
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 2.5e-273 946.4 1602 39.5
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 1.1e-263 914.4 1561 38.8
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 2.2e-253 880.2 1581 38.0
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 5.6e-241 839.0 1601 34.6
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.3e-240 837.8 1598 34.7
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.3e-240 837.8 1598 34.7
Oeu035109.1 Olea europaea HOM05D000921 ORTHO05D004153 8.4e-237 825.1 1246 41.5
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 6.0e-235 818.9 1612 35.4
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 6.2e-232 808.9 1581 34.2
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 2.5e-228 797.0 1595 34.9
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 1.1e-223 781.6 1331 39.9
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 3.0e-218 763.5 1431 36.5
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 1.5e-217 761.1 894 49.3
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.7e-208 729.9 1634 32.6
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.7e-208 729.9 1634 32.6
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.1e-203 712.6 1632 32.0
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.1e-203 712.6 1632 32.0
arahy.Tifrunner.gnm1.ann1.BT7PUB Arachis hypogaea HOM05D000921 ORTHO05D004153 6.8e-162 576.2 1011 38.6
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 8.9e-138 496.1 615 47.5
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 3.8e-128 464.2 690 42.3
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 5.6e-124 450.3 612 44.3
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 4.8e-115 420.6 1523 26.6
SMO370G0001 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 1.9e-111 408.7 883 33.0
Gohir.A08G045265 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.7e-104 385.6 453 46.8
FAN20G1679 Fragaria x ananassa HOM05D000921 ORTHO05D004153 5.1e-101 374.0 400 53.8
CAN.G1355.6 Capsicum annuum HOM05D000921 ORTHO05D004153 5.9e-97 360.5 889 32.6
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 1.6e-86 325.9 517 41.6
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 1.1e-82 313.2 389 47.3
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 6.1e-70 270.8 430 40.9
Oeu041302.1 Olea europaea HOM05D000921 ORTHO05D004153 2.0e-68 265.8 341 46.6
HPP92_021304 Vanilla planifolia HOM05D000921 ORTHO05D004153 1.0e-64 253.4 297 49.5
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 2.2e-59 235.7 312 46.2
Hund07867 Selenicereus undatus HOM05D000921 ORTHO05D004153 2.7e-49 202.2 218 50.9
HPP92_021301 Vanilla planifolia HOM05D000921 ORTHO05D004153 2.4e-34 152.5 185 42.7
CAN.G1355.5 Capsicum annuum HOM05D000921 ORTHO05D004153 1.1e-29 137.1 409 31.3
CDE04G2373 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 3.1e-29 135.6 180 40.6
HPP92_021302 Vanilla planifolia HOM05D000921 ORTHO05D004153 1.2e-28 133.7 135 54.8
CDE10G0462 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 2.4e-21 109.4 387 26.1
HPP92_021303 Vanilla planifolia HOM05D000921 ORTHO05D030476 8.4e-19 100.9 140 45.0
Cpa.g.sc52.121 Carica papaya HOM05D000921 ORTHO05D004153 3.2e-10 72.4 124 42.7
Mapoly0001s0542 Marchantia polymorpha HOM05D000921 ORTHO05D004782 1.2e-09 70.5 193 30.6
Psat2g055000 Pisum sativum HOM05D002140 ORTHO05D006885 6.7e-08 64.7 55 63.6
Nn1g00511 Nelumbo nucifera HOM05D000921 ORTHO05D015037 2.5e-07 62.8 76 47.4
Cfa021767 Carpinus fangiana HOM05D000921 ORTHO05D004153 2.8e-06 59.3 421 21.1
Lsat_1_v5_gn_4_20061 Lactuca sativa HOM05D000548 ORTHO05D015037 4.8e-06 58.5 96 42.7


User provided reference genes

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