Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 0.0e+00 1832.8 943 100.0
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 0.0e+00 1137.5 908 66.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 0.0e+00 1128.6 880 66.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1076.6 930 63.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.7e-311 1070.1 875 64.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.2e-288 994.6 872 60.1
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.5e-279 964.9 862 59.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.6e-271 939.1 918 54.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 3.4e-271 938.7 876 57.2
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 7.4e-266 921.0 874 55.3
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.0e-263 912.9 880 54.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 5.8e-263 911.4 875 55.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.2e-262 909.4 876 55.0
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 5.5e-261 904.8 880 54.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.7e-258 894.8 878 54.8
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 5.9e-255 884.8 909 53.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 2.2e-254 882.9 874 53.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.9e-254 882.5 886 54.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 4.2e-253 878.6 877 54.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.5e-253 878.2 876 54.1
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.3e-251 872.8 879 54.2
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 6.7e-251 871.3 876 53.7
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-248 864.0 876 52.7
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-248 862.8 876 52.7
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 9.1e-248 860.9 876 53.8
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.5e-247 860.1 885 53.1
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 3.4e-247 859.0 876 53.3
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 5.9e-247 858.2 879 53.2
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 5.0e-246 855.1 914 53.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 8.5e-246 854.4 876 52.7
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 7.2e-245 851.3 866 53.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 6.1e-244 848.2 891 53.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.0e-243 847.4 878 52.7
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.3e-243 846.3 1378 40.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.1e-243 845.1 858 53.5
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.1e-242 844.0 877 51.7
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-241 840.5 876 51.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.2e-241 837.8 876 51.6
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 8.2e-241 837.8 761 56.9
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-240 836.3 672 65.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 5.3e-240 835.1 886 51.4
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.0e-239 833.2 877 50.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.3e-238 830.5 872 50.9
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.1e-236 823.2 845 52.5
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 5.2e-235 818.5 853 51.7
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.2e-233 811.2 843 52.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.4e-232 810.4 876 50.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.1e-232 809.3 845 52.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.1e-232 809.3 868 53.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 5.3e-232 808.5 874 51.7
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.1e-232 807.7 893 50.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.0e-231 806.6 876 51.1
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 3.2e-229 799.3 908 49.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.2e-228 797.3 984 47.4
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.6e-228 797.0 885 49.7
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 6.7e-227 791.6 843 50.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 6.7e-227 791.6 906 50.8
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 4.8e-225 785.4 832 51.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-224 784.3 944 48.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 4.1e-224 782.3 962 48.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.3e-222 777.3 881 48.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.2e-221 772.7 881 49.5
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 6.1e-220 768.5 884 48.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.0e-218 763.5 910 47.4
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 7.5e-218 761.5 863 48.8
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.6e-215 753.8 950 46.2
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.2e-213 745.7 882 48.3
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 4.1e-208 729.2 882 46.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 7.0e-208 728.4 828 49.2
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 7.0e-208 728.4 773 52.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.2e-202 711.1 844 47.0
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.5e-202 710.7 882 46.1
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.7e-201 706.1 852 48.4
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.5e-199 699.5 840 46.3
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 7.8e-199 698.4 839 47.0
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-198 697.2 848 45.8
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-197 694.5 880 45.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-196 690.6 880 45.8
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.4e-192 677.6 879 46.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.6e-191 674.1 837 44.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.5e-189 667.5 827 46.7
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.9e-189 667.2 882 43.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.9e-189 667.2 1341 35.2
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-187 661.0 870 44.5
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.4e-186 656.4 848 44.3
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-184 651.0 894 44.5
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.1e-179 633.3 837 42.8
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-178 630.9 858 41.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.5e-178 630.9 858 41.6
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.2e-175 621.3 880 43.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.6e-175 619.4 837 42.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 6.0e-175 619.0 837 42.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 7.8e-175 618.6 837 41.9
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.0e-174 618.2 828 41.4
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.3e-174 617.1 841 42.9
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.1e-173 614.8 831 43.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.8e-172 609.4 845 41.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 6.2e-172 609.0 834 40.9
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.8e-171 607.4 644 53.1
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 5.3e-171 605.9 829 42.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-170 604.7 821 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.9e-165 587.4 881 40.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.5e-165 587.0 834 40.4
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.6e-159 567.8 729 46.6
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-158 564.7 836 39.7
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.4e-157 558.9 902 38.4
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.4e-155 554.7 837 38.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.4e-153 545.8 709 42.3
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.3e-150 537.3 875 38.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.7e-149 532.7 865 38.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.7e-148 530.0 524 54.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 4.3e-141 506.5 837 37.5
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.7e-132 476.9 465 55.5
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 9.1e-131 472.2 564 48.4
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.9e-130 469.5 453 55.6
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-125 454.9 554 48.4
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.1e-123 446.8 410 57.6
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.3e-116 422.9 345 61.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.3e-110 404.4 321 63.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 4.2e-104 383.6 385 51.4
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-102 378.3 761 34.7
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-100 372.1 766 32.1
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.3e-97 362.1 312 59.3
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 6.1e-95 353.2 418 46.2
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 8.0e-95 352.8 1088 26.1
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.8e-94 349.7 392 49.2
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 1.3e-92 345.5 401 44.4
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.3e-89 334.7 380 48.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.9e-89 334.0 363 49.3
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 3.3e-88 330.9 338 50.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.2e-86 323.6 391 47.3
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.7e-79 300.4 280 54.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.4e-78 298.9 566 33.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 8.9e-78 296.2 469 37.1
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 7.8e-66 256.5 247 51.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.0e-65 254.6 187 65.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.9e-65 254.2 259 49.8
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.8e-63 248.1 277 50.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-62 245.7 326 42.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.9e-61 239.6 460 33.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.2e-58 232.6 344 41.6
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.3e-56 224.2 178 63.5
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.2e-53 216.1 437 36.4
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.6e-50 205.7 178 63.5
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.5e-48 198.4 359 31.8
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 6.9e-46 190.3 348 32.2
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.5e-45 187.6 330 34.5
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.2e-42 179.5 139 62.6
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.5e-37 161.0 145 55.9
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.1e-35 156.4 120 63.3
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-35 156.4 162 47.5
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 2.7e-34 151.8 217 46.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 6.0e-34 150.6 247 32.0
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 4.3e-32 144.4 131 51.9
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-30 139.4 184 45.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 4.1e-30 137.9 151 47.0
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 9.0e-30 136.7 194 44.8
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.5e-29 134.4 100 66.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.9e-27 129.0 85 67.1
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.2e-27 128.3 150 46.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 7.2e-27 127.1 89 69.7
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-26 125.9 123 56.1
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.7e-26 125.2 90 65.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.9e-24 119.0 79 68.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 5.3e-22 110.9 124 44.4
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.5e-21 109.4 204 37.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 5.9e-21 107.5 80 65.0
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 1.9e-19 102.4 160 35.6
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 3.2e-19 101.7 92 52.2
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-18 99.8 122 43.4
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.7e-17 94.0 145 37.9
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 7.4e-16 90.5 89 47.2
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 1.8e-14 85.9 109 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.0e-12 80.1 91 39.6
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.4e-11 73.6 59 55.9
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 2.6e-08 65.5 46 63.0
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 5.7e-08 64.3 319 21.9
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 9.7e-08 63.5 51 56.9
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.8e-07 62.0 88 40.9
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 4.8e-07 61.2 35 80.0
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 6.3e-07 60.8 81 46.9
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 6.3e-07 60.8 95 37.9
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.0e-06 57.4 59 54.2
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 9.1e-06 57.0 148 31.1


User provided reference genes

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