Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.5e-252 874.4 416 100.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 9.4e-189 663.7 464 70.7
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 9.4e-189 663.7 464 70.7
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.6e-188 661.4 464 70.3
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 2.3e-187 659.1 478 69.2
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 7.7e-183 644.0 479 67.4
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.9e-182 642.1 458 69.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 4.2e-181 638.3 472 67.2
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 5.5e-181 637.9 460 69.3
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 9.4e-181 637.1 458 68.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-180 634.8 479 67.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-180 634.8 479 67.4
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.8e-179 632.9 461 67.7
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.8e-179 632.9 457 68.9
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.3e-179 632.5 461 68.8
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.0e-179 632.1 458 67.9
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 3.9e-179 631.7 457 68.9
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 8.8e-179 630.6 456 68.9
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.5e-178 629.8 461 68.5
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 2.0e-178 629.4 464 67.5
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 2.6e-178 629.0 471 66.7
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 4.4e-178 628.2 467 67.7
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 5.7e-178 627.9 472 66.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.7e-178 627.9 456 69.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 5.7e-178 627.9 464 68.1
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 7.4e-178 627.5 464 67.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 9.7e-178 627.1 464 66.8
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.2e-177 625.9 461 67.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 2.2e-177 625.9 457 68.7
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.7e-177 625.2 463 67.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.8e-177 624.8 457 68.1
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 4.8e-177 624.8 476 67.0
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 8.2e-177 624.0 463 68.0
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.1e-176 623.6 461 68.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.4e-176 623.2 454 68.5
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.8e-176 622.9 457 67.8
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 3.1e-176 622.1 448 69.6
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 4.1e-176 621.7 464 67.2
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 5.3e-176 621.3 456 67.5
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 9.1e-176 620.5 487 64.1
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 9.1e-176 620.5 457 68.1
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.6e-175 619.8 457 67.6
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.6e-175 619.0 457 67.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.6e-175 619.0 463 67.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 3.5e-175 618.6 472 66.5
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 4.5e-175 618.2 472 66.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 5.9e-175 617.8 463 67.2
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.9e-175 617.8 461 68.3
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 7.7e-175 617.5 456 68.0
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.7e-175 617.5 461 66.8
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.0e-174 617.1 463 67.2
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.0e-174 617.1 463 67.2
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.3e-174 616.7 463 67.0
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.7e-174 616.3 456 67.8
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.7e-174 616.3 463 67.0
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 6.5e-174 614.4 463 66.5
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.1e-173 613.6 462 66.9
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.1e-173 613.6 463 66.5
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.5e-173 613.2 461 66.6
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.5e-173 613.2 444 69.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.9e-173 612.8 456 66.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 2.5e-173 612.5 466 67.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 2.5e-173 612.5 457 66.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 7.2e-173 610.9 480 65.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 9.4e-173 610.5 454 67.0
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.2e-172 610.1 456 67.5
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.2e-172 610.1 458 67.9
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.2e-172 610.1 458 68.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.6e-172 609.8 465 66.2
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.6e-172 609.8 456 67.3
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.1e-172 609.4 471 66.5
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.7e-172 609.0 438 69.4
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 3.6e-172 608.6 329 85.7
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 4.7e-172 608.2 457 67.2
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 4.7e-172 608.2 461 66.4
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 6.1e-172 607.8 463 66.3
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.8e-171 606.3 458 66.8
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.0e-171 605.5 455 67.5
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 3.0e-171 605.5 467 66.6
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.0e-171 605.5 458 67.2
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.5e-170 603.2 458 67.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.0e-170 602.8 454 65.6
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 4.4e-170 601.7 457 65.9
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 7.5e-170 600.9 463 65.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 7.5e-170 600.9 456 66.0
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 9.7e-170 600.5 460 66.3
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.3e-169 600.1 438 68.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.3e-169 600.1 345 82.6
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 2.2e-169 599.4 462 65.8
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.7e-169 598.6 456 65.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 3.7e-169 598.6 456 66.9
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.7e-169 598.6 492 62.8
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 6.3e-169 597.8 454 65.0
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.3e-169 597.8 339 82.6
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 8.2e-169 597.4 454 65.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.1e-168 597.0 456 64.7
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 3.1e-168 595.5 455 64.4
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 5.3e-168 594.7 472 64.0
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 2.0e-167 592.8 455 64.4
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.2e-166 589.3 432 68.3
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.1e-165 587.0 461 65.3
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-165 585.9 427 68.9
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.1e-164 582.8 343 79.3
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.2e-163 578.2 343 79.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.6e-162 575.9 475 62.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.0e-159 566.2 480 61.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 3.5e-159 565.5 477 61.2
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.6e-154 549.3 366 73.5
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.0e-152 541.2 478 59.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 2.8e-148 529.3 331 74.0
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.0e-147 527.3 449 58.1
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.7e-145 520.0 332 72.9
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.5e-143 512.3 303 77.9
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.5e-141 506.9 492 56.5
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.3e-139 499.6 517 54.7
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.0e-138 496.5 479 55.9
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.3e-126 457.2 336 68.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.5e-125 453.0 267 79.0
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.7e-121 440.3 467 52.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.9e-121 438.7 283 74.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.0e-118 431.0 267 76.4
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.1e-104 381.7 248 72.6
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 5.6e-101 372.1 267 67.8
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.8e-100 369.8 342 53.2
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 3.2e-96 356.3 277 62.8
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.3e-93 345.9 419 48.2
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 5.9e-82 308.9 281 58.4
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 9.3e-80 301.6 275 57.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 2.2e-68 263.8 155 78.7
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 3.8e-65 253.1 164 72.6
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 2.5e-64 250.4 164 72.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 2.2e-60 237.3 148 75.0
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.1e-59 235.0 148 74.3
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.2e-57 227.3 331 42.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 3.2e-56 223.4 347 42.1
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 5.2e-46 189.5 228 47.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 5.2e-46 189.5 228 47.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.2e-45 188.3 99 84.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.2e-45 188.3 99 84.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 3.4e-45 186.8 111 78.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.3e-44 182.6 211 48.8
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 4.0e-38 163.3 105 72.4
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.0e-37 161.0 342 35.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 5.4e-35 152.9 97 75.3
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.2e-31 141.7 77 83.1
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 3.4e-29 133.7 200 41.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 4.9e-28 129.8 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.5e-26 123.6 84 71.4
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 3.7e-20 103.6 66 69.7
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.7e-15 86.7 54 74.1
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.9e-12 77.4 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.4e-11 74.3 35 91.4
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.7e-10 70.9 60 56.7
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-07 61.6 37 78.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.1e-07 61.2 34 79.4


User provided reference genes

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