Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.2e-209 733.0 409 100.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.2e-157 558.5 409 77.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 9.3e-157 557.4 409 77.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.0e-155 553.9 409 76.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 7.4e-154 547.7 409 74.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.3e-138 495.4 415 69.6
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.6e-135 486.1 415 70.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.5e-130 469.5 415 68.2
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-129 466.8 411 68.4
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.2e-129 466.5 408 67.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.8e-129 466.1 416 68.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.1e-128 464.2 410 67.6
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.4e-128 463.8 417 66.7
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-128 463.0 411 68.1
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.6e-127 459.5 415 68.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.4e-127 459.1 415 68.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-126 457.2 411 68.4
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.9e-125 453.4 413 67.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.2e-125 452.2 409 67.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.2e-124 450.7 411 66.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.6e-124 450.3 424 65.1
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.7e-124 448.7 415 66.3
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 6.1e-124 448.4 411 67.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.8e-123 446.8 413 67.3
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.8e-123 446.8 420 66.4
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.3e-123 446.4 407 66.6
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 3.9e-123 445.7 414 66.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.0e-122 443.4 410 66.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.3e-122 442.6 403 66.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 5.7e-122 441.8 411 66.9
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.2e-121 439.9 409 65.5
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.7e-121 439.1 411 65.5
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.8e-121 438.7 420 63.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.4e-120 437.2 411 66.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.4e-120 437.2 408 66.7
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 7.0e-120 434.9 413 65.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-119 434.1 412 66.7
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.2e-119 434.1 415 64.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.6e-119 433.0 409 67.2
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.6e-119 433.0 411 64.2
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.6e-119 433.0 410 66.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.6e-119 433.0 410 63.9
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-119 432.6 410 63.9
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.5e-119 432.2 412 66.7
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.9e-119 431.8 411 65.5
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 7.7e-119 431.4 406 67.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.0e-118 431.0 354 71.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.0e-118 431.0 414 64.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 3.8e-118 429.1 406 66.7
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.0e-118 428.7 412 65.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 5.0e-118 428.7 411 63.5
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 8.5e-118 427.9 410 63.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.1e-117 427.6 411 65.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.5e-117 427.2 408 62.7
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.5e-117 426.4 412 65.3
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.5e-117 425.2 354 70.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.2e-117 424.9 354 70.6
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 7.2e-117 424.9 412 64.3
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 9.4e-117 424.5 411 64.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.2e-116 424.1 409 61.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.1e-116 423.3 431 62.9
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.6e-116 422.5 413 62.5
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.7e-116 422.2 429 63.2
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.4e-115 420.6 413 63.9
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 8.8e-115 417.9 418 64.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.0e-114 416.8 406 65.8
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.0e-114 416.8 412 63.8
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.6e-114 416.4 412 62.6
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.3e-114 416.0 410 63.4
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.7e-114 415.2 425 61.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 7.4e-114 414.8 409 62.6
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 9.7e-114 414.5 423 61.0
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.7e-113 413.7 337 72.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.2e-113 413.3 415 63.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 8.2e-113 411.4 408 63.5
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 5.3e-112 408.7 411 63.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 5.3e-112 408.7 406 63.1
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 4.5e-111 405.6 432 60.9
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 8.5e-110 401.4 411 63.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 8.5e-110 401.4 407 63.9
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 8.5e-110 401.4 406 63.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.9e-109 400.2 409 60.9
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.5e-109 399.8 406 64.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 7.2e-109 398.3 407 61.7
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 9.4e-109 397.9 411 60.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-108 396.7 412 60.7
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 2.7e-108 396.4 408 62.3
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.6e-108 396.0 411 60.6
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.3e-107 393.3 405 62.5
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.3e-107 393.3 437 58.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.2e-107 392.1 411 60.3
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.6e-106 389.8 432 59.3
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 7.5e-106 388.3 431 59.4
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.7e-105 387.1 334 70.1
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 4.8e-105 385.6 415 61.9
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.4e-104 384.0 339 65.2
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.1e-104 381.3 397 60.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.7e-103 379.8 329 65.0
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.9e-103 378.6 432 57.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.9e-103 378.6 432 57.9
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.0e-102 377.9 435 58.2
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.0e-102 377.9 410 58.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.7e-102 377.1 433 59.6
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.5e-101 373.2 432 59.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.2e-101 372.9 414 57.5
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.2e-101 372.9 405 60.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 7.2e-101 371.7 427 58.1
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.7e-100 369.0 406 58.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 4.0e-99 365.9 432 56.0
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 4.0e-99 365.9 436 57.3
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.2e-98 364.4 437 56.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.0e-98 363.6 420 58.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.7e-97 359.4 314 68.8
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 6.3e-97 358.6 405 56.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-96 355.9 363 60.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.3e-94 350.9 353 63.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 5.5e-93 345.5 347 64.3
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 9.5e-93 344.7 335 63.6
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.0e-90 337.0 438 53.4
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.4e-90 335.9 328 63.4
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-88 329.3 410 54.9
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 9.5e-85 318.2 379 51.7
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 5.8e-82 308.9 423 49.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.1e-80 302.8 344 59.9
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.6e-79 300.8 384 54.2
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.9e-78 296.2 342 54.1
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-72 277.3 401 51.6
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.2e-71 274.6 417 49.4
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 4.3e-69 266.2 421 49.6
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.1e-68 263.8 242 66.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.8e-63 245.4 422 44.5
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.6e-60 236.5 310 52.6
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.2e-56 223.0 229 57.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-48 198.4 210 57.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.6e-47 193.0 224 55.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-45 188.3 277 50.9
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-45 188.3 277 50.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.4e-43 181.4 388 39.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.3e-43 179.5 343 42.0
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 6.9e-43 179.1 252 49.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.2e-42 178.3 351 43.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.9e-41 173.7 177 57.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.2e-40 170.2 281 44.8
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 5.4e-40 169.5 403 38.0
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.4e-35 154.8 398 36.9
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.2e-32 143.7 226 44.7
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.3e-30 137.5 213 46.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.1e-29 135.2 100 69.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.8e-27 127.9 109 64.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 7.6e-26 122.5 151 60.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 6.3e-20 102.8 249 31.7
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 7.7e-18 95.9 106 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.0e-14 84.0 278 28.1
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.1e-08 65.5 70 60.0
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 9.4e-08 62.4 228 32.9


User provided reference genes

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