Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.6e-132 474.6 239 100.0
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 2.3e-54 216.5 180 70.6
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.8e-22 110.5 207 35.7
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.6e-21 105.5 136 42.6
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 1.5e-18 97.4 192 34.9
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 1.5e-18 97.4 192 34.9
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 4.5e-18 95.9 226 29.6
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.0e-17 94.7 189 33.3
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 1.3e-17 94.4 201 31.8
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.2e-17 93.6 191 34.0
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 2.9e-17 93.2 161 33.5
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 6.5e-17 92.0 176 32.4
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 8.4e-17 91.7 212 32.1
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 1.9e-16 90.5 174 33.9
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 1.9e-16 90.5 191 31.9
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 2.5e-16 90.1 191 31.9
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 3.2e-16 89.7 192 32.3
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 7.1e-16 88.6 212 31.1
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 9.3e-16 88.2 208 29.8
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 9.3e-16 88.2 212 31.1
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 9.3e-16 88.2 206 31.1
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 1.2e-15 87.8 192 31.8
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 1.2e-15 87.8 212 31.1
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 1.2e-15 87.8 39 89.7
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.6e-15 87.4 210 30.0
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 2.7e-15 86.7 208 30.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.5e-15 86.3 189 30.2
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 3.5e-15 86.3 210 28.6
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 3.5e-15 86.3 210 28.6
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 3.5e-15 86.3 189 30.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.5e-15 86.3 184 33.2
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 4.6e-15 85.9 189 29.1
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 4.6e-15 85.9 189 29.1
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 4.6e-15 85.9 198 31.3
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 4.6e-15 85.9 210 28.1
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 4.6e-15 85.9 210 29.0
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 6.0e-15 85.5 189 28.6
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 6.0e-15 85.5 189 28.6
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 6.0e-15 85.5 190 31.1
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 7.9e-15 85.1 193 30.6
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 7.9e-15 85.1 189 29.6
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 7.9e-15 85.1 189 29.1
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 7.9e-15 85.1 222 26.6
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.0e-14 84.7 189 29.6
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 1.0e-14 84.7 208 29.3
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.8e-14 84.0 189 28.6
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.8e-14 84.0 189 29.1
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.8e-14 84.0 215 28.8
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 2.3e-14 83.6 189 28.0
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 3.0e-14 83.2 189 30.2
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 3.0e-14 83.2 188 31.4
Hund10261 Selenicereus undatus HOM05D005266 ORTHO05D006416 3.0e-14 83.2 68 75.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 3.0e-14 83.2 189 28.6
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 3.0e-14 83.2 137 35.8
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.9e-14 82.8 212 28.8
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 3.9e-14 82.8 189 29.6
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 3.9e-14 82.8 192 29.2
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 3.9e-14 82.8 215 27.9
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.1e-14 82.4 188 30.3
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 6.7e-14 82.0 189 29.6
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 6.7e-14 82.0 189 30.7
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 6.7e-14 82.0 213 28.6
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 6.7e-14 82.0 208 30.8
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 8.7e-14 81.6 189 29.6
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 8.7e-14 81.6 192 30.7
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 1.1e-13 81.3 188 29.3
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 1.1e-13 81.3 188 29.3
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 1.1e-13 81.3 191 30.9
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 1.1e-13 81.3 215 29.8
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 1.5e-13 80.9 191 28.3
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 1.5e-13 80.9 189 29.6
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 1.9e-13 80.5 187 29.9
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 2.5e-13 80.1 189 29.6
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 3.3e-13 79.7 190 30.0
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 3.3e-13 79.7 190 27.4
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 3.3e-13 79.7 187 29.4
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 4.3e-13 79.3 189 27.0
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 4.3e-13 79.3 191 30.4
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 5.7e-13 79.0 191 29.8
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 5.7e-13 79.0 189 27.5
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 7.4e-13 78.6 197 28.9
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 7.4e-13 78.6 192 28.1
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 9.7e-13 78.2 197 28.9
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.3e-12 77.8 217 29.5
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.6e-12 77.4 188 30.3
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.6e-12 77.4 188 29.8
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 1.6e-12 77.4 188 29.3
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 2.2e-12 77.0 189 27.5
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 2.8e-12 76.6 189 27.0
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 2.8e-12 76.6 228 26.8
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 3.7e-12 76.3 220 27.3
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 3.7e-12 76.3 187 29.4
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 6.3e-12 75.5 187 27.8
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 8.2e-12 75.1 188 26.1
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.4e-11 74.3 205 29.8
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 1.4e-11 74.3 94 42.6
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 2.4e-11 73.6 186 29.6
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 4.1e-11 72.8 84 42.9
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 5.3e-11 72.4 184 29.3
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 5.3e-11 72.4 78 47.4
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 6.9e-11 72.0 186 28.5
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 9.0e-11 71.6 188 26.6
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 1.5e-10 70.9 216 26.4
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 2.0e-10 70.5 230 25.7
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 4.5e-10 69.3 40 72.5
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 4.5e-10 69.3 40 67.5
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.0e-09 68.2 40 67.5
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.0e-09 68.2 40 70.0
Hund14620 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.8e-09 66.2 52 73.1
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 5.0e-09 65.9 40 67.5
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 8.5e-09 65.1 189 27.5
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 8.5e-09 65.1 37 70.3
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 2.5e-08 63.5 40 62.5
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 4.2e-08 62.8 37 70.3
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.5e-08 62.4 33 78.8
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.2e-07 61.2 40 65.0
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 2.7e-07 60.1 51 56.9
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.6e-07 59.3 69 44.9
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 6.1e-07 58.9 38 65.8
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 1.8e-06 57.4 56 51.8
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 1.8e-06 57.4 206 23.3
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.3e-06 57.0 74 39.2
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 2.3e-06 57.0 37 64.9
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 2.3e-06 57.0 50 54.0
Hund19757 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.0e-06 56.6 35 85.7


User provided reference genes

Program Settings