Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 6.2e-291 1003.4 515 100.0
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.4e-237 826.2 512 80.3
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 9.1e-234 813.5 512 79.9
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 4.7e-230 801.2 515 78.3
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.2e-206 723.4 515 70.7
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.0e-205 720.3 515 70.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.3e-205 719.2 515 70.7
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 4.0e-205 718.4 516 70.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 1.7e-203 713.0 528 68.9
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 6.3e-203 711.1 515 69.5
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.8e-202 709.5 528 67.6
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.4e-202 709.1 527 71.9
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.1e-202 708.8 515 69.1
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 4.1e-202 708.4 515 69.5
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 5.4e-202 708.0 528 68.8
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.6e-201 706.4 515 69.9
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.0e-201 706.1 515 69.7
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.0e-200 703.7 515 69.5
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 6.6e-200 701.0 528 67.6
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 6.6e-200 701.0 528 67.6
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 8.6e-200 700.7 517 69.1
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 1.5e-199 699.9 529 67.7
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 5.5e-199 698.0 528 67.6
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 7.2e-199 697.6 528 67.8
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 9.5e-199 697.2 518 68.7
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 4.7e-198 694.9 517 68.9
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 6.8e-197 691.0 528 67.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 6.8e-197 691.0 515 67.4
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.5e-196 689.9 517 68.1
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 4.4e-196 688.3 511 67.3
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 7.5e-196 687.6 515 67.4
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 3.7e-195 685.3 517 67.5
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.3e-195 684.5 515 67.2
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.8e-194 682.9 526 66.7
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 4.1e-194 681.8 534 65.7
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 7.0e-194 681.0 517 67.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.6e-193 679.9 529 65.8
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.0e-193 679.5 520 67.9
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.0e-193 679.5 517 66.3
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.0e-193 679.5 513 67.8
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.7e-193 679.1 528 65.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.7e-193 679.1 515 67.2
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 2.7e-193 679.1 505 68.3
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 7.8e-193 677.6 569 62.4
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.0e-192 677.2 517 68.3
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.0e-192 677.2 515 67.0
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.9e-192 675.6 517 66.2
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 2.9e-192 675.6 513 67.4
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 5.0e-192 674.9 513 67.4
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 6.6e-192 674.5 505 66.7
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.9e-191 672.9 515 66.4
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 5.6e-191 671.4 530 64.5
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 5.6e-191 671.4 528 65.2
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 2.8e-190 669.1 526 65.6
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 4.7e-190 668.3 558 62.2
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 5.2e-189 664.8 518 66.6
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.2e-188 663.7 515 65.6
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.3e-187 660.2 530 64.0
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.2e-186 655.6 505 66.1
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 4.1e-186 655.2 515 64.9
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 2.7e-185 652.5 505 65.3
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 1.1e-183 647.1 530 65.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.3e-183 645.6 517 63.8
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.6e-183 644.8 517 64.2
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.1e-181 640.6 517 63.2
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.8e-181 639.8 517 63.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 3.1e-181 639.0 515 63.3
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 5.2e-181 638.3 517 63.1
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 8.9e-181 637.5 539 61.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.0e-180 636.3 517 63.6
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 2.6e-180 636.0 534 61.4
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 3.4e-180 635.6 517 63.1
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.8e-180 634.8 519 63.6
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.8e-180 634.8 517 63.6
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.9e-179 632.5 468 69.2
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.6e-177 626.7 505 63.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 4.6e-177 625.2 519 61.5
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.6e-177 625.2 537 60.7
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 6.0e-177 624.8 506 62.3
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.7e-176 623.2 486 65.8
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 7.3e-175 617.8 538 59.9
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 9.5e-175 617.5 519 60.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.1e-174 616.3 505 61.4
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.8e-174 615.9 519 63.0
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.8e-174 615.9 547 60.9
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.2e-172 610.5 507 60.7
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.0e-172 609.8 515 62.1
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.2e-171 606.3 518 62.0
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.9e-171 605.9 519 60.5
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 3.7e-171 605.5 510 63.1
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 7.1e-170 601.3 507 60.0
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.6e-169 600.1 520 61.3
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.7e-169 599.4 520 61.3
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.5e-169 599.0 515 60.2
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 7.8e-169 597.8 506 61.9
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 5.1e-168 595.1 521 58.7
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 8.6e-168 594.3 520 60.4
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.9e-167 593.2 504 61.5
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 7.3e-167 591.3 520 60.2
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 6.2e-166 588.2 515 61.6
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.9e-162 576.6 515 59.2
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 3.5e-161 572.4 513 59.5
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.1e-159 567.4 432 66.2
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.3e-159 565.8 506 58.1
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 3.8e-155 552.4 442 63.8
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 1.4e-154 550.4 518 55.8
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 3.6e-150 535.8 387 72.1
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.6e-148 529.6 442 61.3
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.2e-145 520.8 450 61.1
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.8e-141 506.9 497 56.1
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 8.2e-134 481.5 354 69.5
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 7.4e-127 458.4 452 56.2
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 8.2e-126 454.9 390 60.0
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 8.5e-123 444.9 529 46.5
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 9.1e-117 424.9 514 45.9
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 4.7e-113 412.5 502 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 2.0e-100 370.5 474 44.5
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 4.8e-94 349.4 467 44.8
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.1e-56 223.8 139 80.6
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.2e-49 201.8 432 38.2
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.4e-40 171.8 123 69.1
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 2.2e-38 164.5 137 62.8
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.9e-26 124.8 79 77.2
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.9e-24 116.3 289 32.5
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 1.1e-21 109.0 73 71.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-21 107.5 143 39.2
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 4.6e-20 103.6 72 73.6
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.8e-19 101.7 104 56.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 3.0e-19 100.9 74 66.2
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 5.1e-19 100.1 75 68.0
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 8.7e-11 72.8 269 27.5
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-09 68.2 53 52.8
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.3e-09 66.6 121 37.2
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 6.5e-06 56.6 46 63.0


User provided reference genes

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