Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 2030.4 1046 100.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1295.8 1095 65.6
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1182.9 1031 62.9
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1177.5 1098 59.2
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1158.3 1073 60.0
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1156.4 1070 60.7
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1143.6 1078 59.3
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1139.0 1076 59.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1132.5 1086 58.6
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1131.7 1073 59.2
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1130.5 1087 59.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1129.0 1057 59.6
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1127.1 1083 59.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1124.0 1057 58.8
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1122.1 1068 58.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1121.7 1103 57.7
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1118.6 1061 59.3
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1118.2 1072 58.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1117.4 1071 58.5
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1116.7 1069 59.1
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1114.8 1078 58.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1114.0 1070 58.2
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1112.4 1095 56.8
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1112.4 1058 59.3
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1111.7 1098 57.2
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1111.3 1077 58.1
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1109.7 1074 58.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1109.7 1078 58.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1108.2 1091 57.0
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1106.7 1083 57.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1103.6 1078 56.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1102.8 1089 56.8
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1102.4 1065 58.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1100.9 1050 58.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1100.9 1075 57.9
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1099.7 1072 58.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1099.0 1071 57.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1099.0 1062 57.8
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1099.0 1083 56.3
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1095.5 1089 56.9
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1094.7 1078 57.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1093.2 1071 57.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1089.7 1099 56.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1089.7 1061 57.5
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1089.3 1083 56.7
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1088.2 1068 57.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1087.8 1068 57.1
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1082.0 1131 55.3
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1081.2 1060 57.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1080.9 1068 56.5
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1079.7 1072 56.2
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1079.7 1068 58.5
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1077.4 1068 57.0
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1075.5 1049 56.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1075.1 1069 57.6
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1075.1 1052 58.4
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.4e-310 1069.7 1086 56.3
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 5.4e-310 1067.8 1069 56.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.3e-308 1063.1 1064 57.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.3e-308 1062.4 1042 58.6
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 2.1e-306 1055.8 1063 56.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 5.2e-305 1051.2 1063 56.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 9.9e-304 1047.0 1097 55.0
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.7e-303 1046.2 1067 55.5
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 2.9e-303 1045.4 1063 55.3
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.1e-302 1043.5 1091 54.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 9.3e-302 1040.4 1067 55.2
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 2.1e-301 1039.3 1069 54.8
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 4.6e-301 1038.1 1051 55.7
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 6.0e-301 1037.7 1046 55.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 2.3e-300 1035.8 1073 54.1
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 5.6e-299 1031.2 1065 54.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-297 1025.4 1064 54.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 4.0e-297 1025.0 1084 53.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 9.0e-297 1023.8 1066 54.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 4.4e-296 1021.5 1062 54.0
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 3.8e-295 1018.5 1060 54.4
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-294 1016.9 1063 54.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 5.4e-294 1014.6 1070 53.9
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 1.2e-293 1013.4 1058 54.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.6e-293 1013.1 948 61.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 3.9e-292 1008.4 1071 53.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 8.1e-290 1000.7 1055 53.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.0e-288 996.1 1069 53.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.6e-288 995.7 1002 58.0
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.9e-287 992.3 1061 53.2
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 2.3e-284 982.6 1067 53.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 5.1e-284 981.5 1076 53.3
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 2.0e-280 969.5 947 56.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.0e-280 969.5 1038 52.2
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 2.2e-279 966.1 1041 52.0
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-278 963.0 948 56.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 9.6e-275 950.7 1172 49.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.6e-269 933.3 953 55.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 8.2e-266 921.0 1277 45.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 3.7e-258 895.6 1053 51.3
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 3.1e-257 892.5 938 55.1
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 9.1e-257 891.0 1067 49.8
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 4.7e-237 825.5 721 62.6
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.3e-231 807.4 907 52.4
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 6.5e-231 805.1 900 53.1
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 7.0e-225 785.0 921 50.3
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 8.6e-207 724.9 853 52.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.1e-201 708.0 1092 40.8
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.7e-194 684.1 1134 40.1
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.7e-191 674.1 1104 39.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 3.9e-191 672.9 1071 39.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.7e-186 657.5 1110 37.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.3e-173 614.8 637 53.4
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.5e-169 599.4 1056 36.9
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.6e-165 587.8 527 59.2
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.8e-165 587.0 774 47.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 6.2e-165 585.9 801 45.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 9.0e-164 582.0 705 50.2
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 7.9e-160 568.9 527 58.6
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.2e-149 534.3 903 42.3
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 6.3e-149 532.7 871 43.2
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.5e-139 501.5 655 47.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 4.5e-139 500.0 529 52.6
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 6.8e-111 406.4 532 44.7
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.8e-100 371.7 351 60.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.2e-100 370.9 351 60.4
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.0e-98 364.4 228 78.1
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.6e-91 340.5 376 55.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.2e-85 321.6 690 35.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.3e-82 312.4 354 49.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.0e-82 311.2 820 30.0
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.5e-81 308.9 310 56.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.8e-79 300.1 186 74.7
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.9e-69 267.3 287 54.4
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 4.8e-64 250.8 486 38.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.2e-62 246.1 1051 24.8
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.4e-60 239.2 194 59.8
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 4.2e-60 237.7 555 32.4
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.9e-58 231.1 141 81.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 8.7e-58 229.9 141 82.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 9.6e-57 226.5 244 51.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.0e-54 218.8 145 75.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 4.5e-54 217.6 256 48.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.3e-50 205.3 240 51.2
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.1e-50 204.1 1290 21.1
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 2.9e-45 188.3 119 77.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-44 186.4 160 63.1
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-44 184.5 116 78.4
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.0e-43 180.6 116 75.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 5.5e-36 157.5 119 66.4
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.2e-36 157.1 468 31.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 6.7e-34 150.6 1159 21.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 6.3e-32 144.1 83 83.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 6.9e-31 140.6 82 84.1
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.3e-29 136.3 133 53.4
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 6.5e-29 134.0 83 74.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.2e-27 129.8 117 53.8
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.6e-27 129.4 181 45.3
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 2.1e-27 129.0 162 43.8
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 5.1e-26 124.4 153 46.4
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 7.4e-25 120.6 134 49.3
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.7e-22 110.5 194 39.7
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.2e-21 109.0 108 56.5
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-19 102.8 85 58.8
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.4e-17 94.7 95 53.7
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.7e-17 94.4 105 48.6
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.0e-14 85.9 82 59.8
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.2e-12 78.6 80 60.0
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.7e-11 74.7 84 58.3
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.7e-11 74.7 84 58.3
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.8e-10 72.8 68 60.3
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 5.2e-10 71.2 67 65.7
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 5.2e-10 71.2 79 53.2
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.7e-08 66.2 87 50.6
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.8e-07 62.8 57 61.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.1e-07 61.6 68 61.8


User provided reference genes

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