Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.4e-224 780.8 429 100.0
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.2e-156 556.2 435 75.2
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.0e-145 518.5 424 74.1
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.0e-137 494.2 447 62.6
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.1e-136 490.7 435 68.7
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.5e-136 490.3 445 64.0
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.1e-135 486.5 434 68.2
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.7e-135 485.3 448 64.7
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.1e-135 485.0 444 65.8
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 8.0e-135 484.6 441 61.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-134 483.4 432 61.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.3e-134 483.0 432 61.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-134 483.0 432 61.8
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.1e-134 482.6 432 61.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.1e-134 482.6 433 61.7
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.2e-134 481.9 432 61.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.8e-134 481.5 446 60.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-133 480.3 432 61.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.6e-133 479.6 440 60.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.4e-133 478.8 438 61.2
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.4e-133 478.8 432 62.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 7.5e-133 478.0 436 62.2
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.8e-133 477.6 446 60.5
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 9.8e-133 477.6 432 60.4
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.7e-132 476.9 441 60.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-132 476.1 438 66.0
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-132 476.1 438 66.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.1e-131 474.2 469 57.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.2e-131 472.6 449 65.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.2e-131 472.6 442 62.4
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 4.1e-131 472.2 438 60.5
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 7.0e-131 471.5 441 63.5
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 7.8e-130 468.0 437 60.0
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.7e-129 466.8 438 64.8
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 5.0e-129 465.3 457 61.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.5e-128 463.8 440 60.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.9e-128 463.4 442 60.0
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 3.3e-128 462.6 432 60.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.2e-127 460.7 440 58.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.6e-127 460.3 440 58.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 4.7e-127 458.8 441 59.4
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.2e-127 458.4 442 63.6
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 6.2e-127 458.4 489 55.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.1e-126 457.6 452 59.1
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.4e-126 457.2 442 63.3
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.4e-126 457.2 442 59.5
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.4e-126 457.2 437 58.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.3e-126 456.4 434 60.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 4.0e-126 455.7 440 59.3
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.0e-126 455.7 443 63.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.2e-126 455.3 438 59.6
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 6.8e-126 454.9 445 62.9
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 6.8e-126 454.9 456 63.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.8e-126 454.9 423 60.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.2e-125 454.1 441 58.7
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.0e-125 453.4 455 58.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.0e-125 453.4 435 59.1
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.0e-125 453.4 451 57.6
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.6e-125 453.0 449 58.4
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.4e-125 452.2 439 62.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 4.4e-125 452.2 435 63.9
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 5.8e-125 451.8 449 58.1
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 7.5e-125 451.4 429 62.5
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.8e-125 451.1 447 62.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.3e-124 450.7 440 57.5
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.2e-124 449.9 436 62.8
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.2e-124 449.9 429 60.4
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.9e-124 449.5 441 59.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.9e-124 449.5 432 61.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.7e-124 449.1 438 57.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.7e-124 449.1 444 59.0
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 8.3e-124 448.0 445 56.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.1e-123 447.6 439 58.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 2.4e-123 446.4 438 57.5
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.4e-123 446.4 438 58.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.4e-123 445.3 443 57.8
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.6e-122 442.2 454 55.9
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.7e-121 440.3 453 54.5
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.7e-121 440.3 435 62.8
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.0e-121 439.5 419 58.0
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 8.6e-121 438.0 439 63.1
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.9e-120 436.8 433 57.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.5e-120 436.4 433 58.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 5.6e-120 435.3 455 54.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.1e-119 433.3 432 59.7
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.8e-119 433.0 490 52.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.4e-118 430.6 457 59.1
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.8e-118 430.3 449 53.7
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 5.2e-118 428.7 450 54.4
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.2e-117 427.6 442 57.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 3.4e-117 426.0 454 55.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.7e-116 423.7 454 55.3
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.7e-116 422.5 425 63.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.9e-116 422.2 437 59.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.4e-115 420.6 433 62.1
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.4e-115 420.6 431 61.5
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.9e-115 420.2 460 54.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-115 419.9 462 54.5
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.5e-114 416.0 471 51.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 4.6e-114 415.6 460 53.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.0e-113 414.5 492 50.8
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.1e-112 411.0 443 54.6
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.4e-107 393.3 447 56.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.1e-106 390.2 432 58.6
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-105 387.1 445 57.3
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.7e-105 387.1 439 57.2
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.7e-105 384.8 438 52.3
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.4e-99 366.7 434 56.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.5e-96 356.7 432 53.9
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 9.6e-96 354.8 314 69.7
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.8e-95 353.2 469 46.9
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 9.0e-94 348.2 441 52.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.0e-93 347.1 367 53.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.0e-90 335.5 288 60.8
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 7.9e-90 335.1 373 58.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 5.6e-88 328.9 385 53.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.4e-86 324.3 476 49.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.4e-86 323.6 367 58.3
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.3e-80 302.8 433 47.6
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.8e-78 297.4 420 47.9
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 7.6e-77 292.0 504 41.1
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.6e-66 256.5 306 52.6
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 5.5e-59 232.6 315 47.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.6e-58 231.1 169 69.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 8.2e-55 218.8 213 56.3
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.5e-53 213.4 134 78.4
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.9e-52 210.3 437 40.0
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.2e-51 206.8 437 40.0
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.1e-46 189.9 272 43.0
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.1e-46 189.9 272 43.0
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.6e-42 177.9 341 39.0
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.0e-41 175.3 349 39.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.5e-35 154.1 130 59.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 8.8e-33 145.6 74 91.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-31 141.0 188 48.9
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-29 135.2 80 82.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.3e-28 131.7 69 88.4
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.6e-28 129.4 279 36.2
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 4.7e-26 123.2 69 85.5
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.7e-26 123.2 259 36.7
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.6e-24 117.5 68 80.9
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 5.7e-24 116.3 178 44.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-22 110.2 65 78.5
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 7.0e-22 109.4 81 69.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.0e-21 107.8 105 54.3
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 4.3e-19 100.1 58 82.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 4.3e-19 100.1 58 82.8
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 8.0e-18 95.9 134 49.3
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.7e-15 88.2 483 26.3
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.2e-13 82.0 62 69.4
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 3.0e-12 77.4 91 54.9
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.9e-07 60.1 116 31.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.9e-06 58.2 109 33.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.4e-06 56.6 77 39.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.1e-06 56.2 109 33.0


User provided reference genes

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