Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 6.7e-193 677.2 342 100.0
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 2.8e-167 592.0 342 87.7
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.8e-162 575.5 342 83.3
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.8e-162 575.5 342 83.3
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.0e-161 573.5 340 85.6
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-161 572.8 340 85.3
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.7e-159 565.1 342 82.5
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.9e-159 564.7 343 82.8
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.4e-158 562.4 342 83.6
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 5.4e-158 561.2 347 81.6
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 7.0e-158 560.8 342 81.9
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.5e-157 558.5 342 81.3
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 5.9e-157 557.8 342 81.6
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.3e-156 556.6 343 81.0
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.7e-156 556.2 347 81.0
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 3.9e-156 555.1 345 82.3
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 5.0e-156 554.7 345 80.9
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.3e-155 552.0 342 81.6
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 9.5e-155 550.4 351 78.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.2e-154 550.1 343 80.8
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 3.6e-154 548.5 355 78.9
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 3.6e-154 548.5 349 80.2
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.6e-154 548.5 344 80.2
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.2e-154 547.7 342 79.5
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 6.2e-154 547.7 343 81.3
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 8.0e-154 547.4 342 80.7
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 8.0e-154 547.4 345 80.0
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.4e-153 546.6 347 79.3
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.4e-153 546.6 342 79.5
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.3e-153 545.8 343 81.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.3e-153 545.8 343 79.3
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.1e-153 545.4 345 79.7
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 8.9e-153 543.9 342 79.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 8.9e-153 543.9 342 81.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 2.0e-152 542.7 353 79.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.0e-152 542.7 346 79.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.6e-152 542.3 345 79.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.6e-152 542.3 353 77.3
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.4e-152 542.0 342 78.9
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 7.5e-152 540.8 342 79.8
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 7.5e-152 540.8 345 78.8
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 7.5e-152 540.8 345 79.1
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 9.8e-152 540.4 351 78.6
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.3e-151 540.0 353 78.5
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.2e-151 539.3 342 79.8
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 2.9e-151 538.9 342 78.7
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.9e-151 538.9 345 79.1
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.9e-151 538.9 346 78.9
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 2.9e-151 538.9 325 81.2
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.9e-151 538.9 344 78.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.7e-151 538.5 346 78.9
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 6.4e-151 537.7 344 78.2
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.3e-151 537.3 345 78.6
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 1.1e-150 537.0 343 79.0
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.4e-150 536.6 344 77.9
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.9e-150 536.2 348 77.9
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 4.1e-150 535.0 351 77.2
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 7.0e-150 534.3 342 78.4
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.2e-149 533.5 324 80.2
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.0e-149 532.7 318 82.7
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 2.7e-149 532.3 348 77.3
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 6.0e-149 531.2 330 79.1
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.0e-148 530.4 347 77.8
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.0e-148 530.4 348 77.0
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.3e-148 529.3 347 77.5
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 3.9e-148 528.5 345 77.7
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 6.6e-148 527.7 347 77.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.1e-147 526.9 345 76.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.5e-147 526.6 342 76.9
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 9.5e-147 523.9 359 74.4
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.1e-146 522.7 330 79.4
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.1e-145 520.4 370 73.0
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.4e-145 520.0 348 74.7
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 1.8e-145 519.6 348 74.7
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.3e-145 519.2 345 78.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 2.3e-145 519.2 326 79.4
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 2.3e-145 519.2 327 77.4
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 4.0e-145 518.5 326 79.4
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 8.9e-145 517.3 344 75.9
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 8.9e-145 517.3 343 76.1
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.2e-144 516.9 344 76.7
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.2e-144 516.9 348 76.4
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.4e-144 515.0 346 75.7
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 5.8e-144 514.6 327 78.3
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 9.9e-144 513.8 343 75.5
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 2.2e-143 512.7 346 74.9
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.2e-143 512.7 344 77.3
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 2.2e-143 512.7 327 78.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 4.9e-143 511.5 337 76.3
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 6.4e-143 511.1 343 75.2
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 9.2e-142 507.3 329 78.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.6e-141 506.5 342 73.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.6e-141 506.5 342 73.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.6e-141 506.5 342 73.7
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 2.7e-141 505.8 351 72.9
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 6.0e-141 504.6 351 72.9
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 6.0e-141 504.6 350 73.1
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 7.8e-141 504.2 328 75.6
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 1.3e-140 503.4 346 73.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.3e-140 502.7 328 75.3
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 5.1e-140 501.5 344 73.0
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 8.6e-140 500.7 367 70.6
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.1e-139 500.4 345 77.4
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.9e-139 499.6 342 74.0
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.9e-139 499.6 342 74.0
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 3.3e-139 498.8 349 72.2
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 3.3e-139 498.8 349 72.2
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 4.3e-139 498.4 325 75.1
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.1e-138 496.1 349 71.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 2.1e-138 496.1 328 75.0
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 5.2e-137 491.5 327 73.1
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 9.2e-134 480.7 307 76.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 6.0e-133 478.0 343 72.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 5.1e-132 474.9 389 65.8
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 2.5e-131 472.6 342 71.9
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.6e-130 469.9 345 74.2
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.6e-130 469.9 294 80.6
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.6e-130 469.9 294 80.6
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.4e-129 466.1 344 68.6
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.9e-129 464.5 342 70.5
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 3.8e-127 458.8 272 84.9
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.9e-127 458.4 344 66.9
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 1.4e-126 456.8 336 65.5
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 3.2e-126 455.7 325 71.4
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 9.3e-126 454.1 344 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 6.0e-125 451.4 315 69.5
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 7.8e-125 451.1 346 66.5
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 3.0e-124 449.1 329 69.6
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 3.0e-124 449.1 329 69.6
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.9e-124 448.7 348 65.5
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 6.6e-124 448.0 347 66.6
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.3e-123 445.3 315 68.6
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 7.3e-123 444.5 344 67.7
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.6e-117 426.8 315 66.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.6e-112 407.9 318 63.2
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.3e-111 407.1 343 58.3
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.5e-110 401.7 327 61.5
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.5e-104 383.6 230 81.3
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.1e-97 359.4 228 76.8
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 5.5e-94 348.6 237 71.7
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.7e-90 337.0 198 82.8
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.4e-84 317.4 298 56.4
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 5.5e-78 295.4 194 73.7
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 7.2e-78 295.0 245 63.3
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 7.2e-70 268.5 185 76.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.0e-67 260.4 182 68.1
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.0e-67 260.4 182 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 9.8e-59 231.5 165 67.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.7e-55 220.7 131 81.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 5.0e-55 219.2 123 86.2
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.1e-54 218.0 137 78.8
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.0e-51 207.2 122 78.7
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.7e-45 186.0 164 62.2
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.0e-44 184.9 164 62.2
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-42 177.9 164 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.6e-37 159.8 127 60.6
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 5.6e-30 136.0 118 64.4
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.0e-27 127.5 164 45.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 9.9e-27 125.2 92 69.6
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 6.4e-26 122.5 92 67.4
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.2e-24 118.2 70 82.9
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 5.1e-23 112.8 124 51.6
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 3.4e-19 100.1 71 66.2
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.9e-18 96.3 118 44.9
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 4.3e-14 83.2 78 53.8
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 9.6e-14 82.0 145 39.3
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.9e-09 67.8 50 68.0
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.7e-07 61.2 36 72.2
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 5.1e-07 59.7 42 73.8


User provided reference genes

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