Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.1e-301 1038.1 696 100.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.8e-230 801.6 679 81.0
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.8e-227 792.0 691 80.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 3.0e-224 782.3 662 80.8
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.0e-220 769.6 679 78.9
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.7e-214 750.0 677 79.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 7.7e-212 741.1 674 77.2
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.0e-211 740.7 678 74.5
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.2e-210 735.3 680 76.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.2e-209 733.8 673 74.6
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 8.0e-209 731.1 681 76.4
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.4e-208 730.3 676 78.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.0e-208 729.2 680 74.4
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 9.8e-207 724.2 679 74.4
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 9.8e-207 724.2 617 83.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.3e-206 723.8 661 76.2
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.8e-206 722.6 660 77.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.8e-206 722.6 679 75.7
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 4.1e-205 718.8 672 71.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.0e-203 714.1 670 75.7
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.7e-203 713.4 658 76.7
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.3e-203 713.0 696 68.0
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.9e-203 712.6 673 76.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.8e-203 712.2 682 73.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.6e-203 711.4 676 78.1
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 8.6e-203 711.1 679 73.5
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.5e-202 709.5 673 72.4
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.5e-202 709.5 673 76.7
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.6e-201 706.8 659 77.8
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.7e-201 705.3 673 76.2
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.7e-201 705.3 673 69.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 4.7e-201 705.3 667 67.0
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 4.7e-201 705.3 672 73.8
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.0e-200 704.1 677 75.8
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.2e-199 700.7 656 73.2
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.0e-199 699.9 676 77.7
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.4e-199 699.1 658 73.6
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 7.5e-199 698.0 680 72.5
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.3e-198 697.2 676 76.2
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.3e-198 697.2 678 75.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.7e-198 696.8 682 71.4
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.2e-198 696.4 696 70.8
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 6.3e-198 694.9 676 71.2
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.8e-197 693.3 572 79.2
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 3.1e-197 692.6 694 71.0
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.1e-197 692.6 664 73.5
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.1e-197 692.2 664 77.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 4.1e-197 692.2 680 71.6
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 5.4e-197 691.8 676 71.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.7e-196 689.5 660 77.0
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.0e-195 687.6 667 75.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.3e-195 687.2 680 71.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.3e-195 687.2 676 74.1
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.3e-195 687.2 692 70.8
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.7e-195 686.8 650 77.2
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.7e-195 686.8 683 76.4
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.3e-195 686.4 662 76.9
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 8.6e-195 684.5 669 71.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 7.3e-194 681.4 678 70.8
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 9.5e-194 681.0 683 72.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 6.1e-193 678.3 669 74.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.4e-192 677.2 661 71.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 3.1e-192 676.0 702 72.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 6.8e-192 674.9 673 75.9
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 8.9e-192 674.5 672 75.4
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.5e-191 673.7 669 74.4
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 5.8e-191 671.8 666 75.2
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.3e-190 670.6 678 70.1
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-190 670.2 673 70.3
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-190 670.2 673 70.3
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.2e-190 669.8 673 70.1
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-190 669.8 673 70.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.9e-190 668.7 663 70.4
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 6.4e-190 668.3 673 70.1
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 6.4e-190 668.3 673 70.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 6.4e-190 668.3 650 73.7
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.4e-189 667.2 706 72.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.4e-189 666.4 683 68.7
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.0e-188 663.3 663 70.3
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.7e-188 662.9 666 70.0
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.7e-188 662.9 661 67.6
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.0e-187 661.0 690 69.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.3e-187 660.6 675 68.7
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 3.0e-187 659.4 729 61.7
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.6e-187 658.3 693 64.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 6.6e-187 658.3 676 73.8
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 8.6e-187 657.9 679 71.3
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 8.6e-187 657.9 671 71.8
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.9e-186 656.8 580 71.6
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 4.3e-186 655.6 643 71.4
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 5.6e-186 655.2 661 69.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.4e-184 650.6 679 68.5
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.8e-184 648.3 675 73.2
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.2e-182 643.3 668 70.1
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.9e-182 642.1 660 68.6
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.1e-181 641.0 577 76.4
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 7.0e-181 638.3 680 68.4
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.2e-180 637.5 679 68.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.0e-179 634.4 662 62.5
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.7e-179 633.6 613 76.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 4.7e-177 625.5 668 65.1
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.0e-176 622.5 625 71.4
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.4e-175 619.4 662 68.0
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.9e-171 605.9 655 57.4
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.1e-170 604.4 666 69.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-170 604.0 666 64.1
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.1e-168 596.3 682 63.6
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.2e-166 590.1 578 73.7
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.2e-165 585.9 643 66.9
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.8e-158 562.8 532 82.1
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.3e-154 549.7 679 68.6
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 8.4e-150 535.0 521 74.3
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.7e-147 525.4 620 61.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.4e-143 513.1 697 53.1
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.2e-142 510.4 735 62.2
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.1e-136 491.5 527 71.5
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.9e-134 483.4 533 70.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 8.4e-134 481.9 668 52.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.3e-131 474.6 507 72.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.1e-128 464.9 675 50.1
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.3e-126 458.0 605 54.5
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.6e-124 451.1 528 61.6
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.9e-109 401.0 511 58.1
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.8e-105 387.1 317 65.9
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.2e-105 385.6 294 68.7
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.6e-100 371.3 246 76.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.6e-100 370.2 477 66.2
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.5e-98 364.8 453 46.6
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.1e-96 356.7 313 72.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.4e-88 331.6 476 58.4
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 4.7e-84 316.6 211 86.3
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.1e-72 276.9 285 86.7
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 7.0e-72 276.2 312 52.2
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.8e-67 261.5 319 72.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.4e-66 257.3 215 63.3
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-65 255.0 287 53.3
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 4.1e-64 250.4 215 81.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-64 249.6 234 54.7
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.1e-63 248.1 311 47.9
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 8.1e-60 236.1 298 47.3
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.9e-56 224.9 309 47.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.7e-49 201.8 138 72.5
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.6e-47 195.3 289 79.2
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.6e-47 195.3 232 47.0
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 5.6e-45 186.8 111 82.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 9.0e-43 179.5 111 79.3
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 4.2e-40 170.6 87 89.7
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.7e-38 165.2 167 56.3
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 4.9e-33 147.1 192 49.5
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-32 144.8 323 54.8
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-28 132.5 123 49.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-25 122.1 98 64.3
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.5e-25 120.2 95 64.2
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-24 118.6 98 64.3
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.2e-24 117.5 107 58.9
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 9.0e-19 99.8 519 31.2
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 7.6e-18 96.7 174 38.5
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 4.6e-15 87.4 69 60.9
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 4.6e-15 87.4 577 28.6
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 4.6e-15 87.4 196 29.6
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 2.5e-13 81.6 148 35.1
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.8e-12 78.2 66 57.6
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 4.8e-12 77.4 62 59.7
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.1e-11 74.7 66 63.6
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-11 74.7 63 57.1
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 3.1e-11 74.7 176 35.2
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.2e-10 72.8 67 55.2
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 5.9e-10 70.5 54 61.1
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.3e-09 69.3 116 38.8
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.8e-09 67.8 95 42.1
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.2e-08 64.3 54 55.6
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.2e-07 62.8 52 57.7
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 2.7e-07 61.6 49 59.2
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 3.6e-07 61.2 71 45.1
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-06 59.3 114 39.5
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 3.9e-06 57.8 112 36.6
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 6.7e-06 57.0 99 38.4
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 6.7e-06 57.0 39 56.4


User provided reference genes

Program Settings