Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.3e-201 704.1 351 100.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.1e-145 520.4 302 85.4
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.0e-145 517.7 349 74.5
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 9.1e-145 517.3 307 84.7
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 4.5e-144 515.0 338 76.3
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 4.2e-142 508.4 297 81.8
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 4.7e-141 505.0 298 82.9
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.2e-139 500.4 304 80.6
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.0e-139 499.6 297 81.1
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 9.8e-139 497.3 299 80.6
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 9.8e-139 497.3 306 80.7
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 2.2e-138 496.1 303 80.2
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 2.2e-138 496.1 293 81.6
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.7e-138 495.4 307 79.5
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 6.3e-138 494.6 298 80.9
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 8.3e-138 494.2 298 79.5
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.1e-137 493.8 297 80.5
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.4e-137 492.7 298 81.9
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 4.1e-137 491.9 306 79.1
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.1e-137 491.9 304 78.6
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 5.4e-137 491.5 290 82.8
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.4e-137 491.5 289 80.6
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 7.0e-137 491.1 289 82.7
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 7.0e-137 491.1 328 74.1
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 7.0e-137 491.1 297 79.8
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 9.2e-137 490.7 295 80.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 9.2e-137 490.7 290 80.3
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 9.2e-137 490.7 290 82.4
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.2e-136 490.3 297 80.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.6e-136 490.0 286 82.2
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 2.7e-136 489.2 307 77.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.7e-136 489.2 310 77.1
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 3.5e-136 488.8 290 81.7
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 5.9e-136 488.0 286 83.9
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.0e-135 487.3 290 82.4
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.3e-135 486.9 286 81.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.3e-135 486.9 302 78.1
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.7e-135 486.5 296 78.7
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 2.3e-135 486.1 288 80.6
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 3.9e-135 485.3 286 81.8
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 6.6e-135 484.6 310 77.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 8.6e-135 484.2 303 79.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 8.6e-135 484.2 299 78.6
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 8.6e-135 484.2 297 80.1
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 8.6e-135 484.2 289 79.9
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.5e-134 483.4 288 79.5
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.9e-134 483.0 308 77.9
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.9e-134 483.0 311 77.2
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.5e-134 482.6 311 77.2
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.5e-134 482.6 311 76.8
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 3.3e-134 482.3 292 81.5
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 4.3e-134 481.9 285 81.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 4.3e-134 481.9 303 77.2
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 5.6e-134 481.5 305 78.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 5.6e-134 481.5 298 78.9
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 7.3e-134 481.1 305 77.7
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.3e-134 481.1 305 77.7
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 7.3e-134 481.1 298 79.5
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 2.1e-133 479.6 306 77.1
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.1e-133 479.6 302 78.5
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.6e-133 478.8 302 78.1
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.6e-133 478.8 302 77.2
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 8.0e-133 477.6 303 76.9
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 5.2e-132 474.9 302 77.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 7.5e-131 471.1 294 77.6
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 7.5e-131 471.1 311 75.2
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.7e-130 469.9 286 79.4
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.2e-130 469.5 298 76.5
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 3.7e-130 468.8 286 79.0
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.7e-130 468.8 301 77.4
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 6.4e-130 468.0 303 77.2
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 8.3e-130 467.6 310 74.5
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 8.3e-130 467.6 291 78.0
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.1e-129 467.2 286 79.0
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 3.2e-129 465.7 286 79.0
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.6e-128 463.4 263 87.8
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.6e-128 461.8 296 76.0
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 4.6e-128 461.8 295 74.9
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 3.9e-127 458.8 289 76.1
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.9e-127 458.8 364 66.8
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 5.0e-127 458.4 302 74.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 6.6e-127 458.0 309 72.8
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 9.5e-126 454.1 289 76.5
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 9.5e-126 454.1 289 76.1
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 9.5e-126 454.1 291 76.6
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 2.8e-125 452.6 303 73.9
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 2.8e-125 452.6 310 74.2
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.8e-125 452.6 313 73.5
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.4e-124 450.3 289 75.8
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.3e-124 449.5 315 70.8
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.1e-124 449.1 291 75.9
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.2e-123 447.2 291 75.6
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.4e-121 439.5 292 74.3
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.4e-121 439.5 292 74.3
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.4e-121 439.5 274 78.1
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 5.4e-121 438.3 287 74.9
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 4.6e-120 435.3 294 72.1
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.0e-119 434.1 292 73.6
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 5.1e-119 431.8 298 73.2
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.1e-116 424.1 326 65.3
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 2.9e-114 416.0 257 79.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.3e-106 390.6 224 82.6
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.7e-106 390.2 224 83.5
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.2e-106 389.8 311 65.9
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.6e-104 382.1 224 80.8
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.6e-104 382.1 224 80.8
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 9.6e-102 374.4 224 79.5
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.2e-93 345.1 224 75.0
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 5.3e-92 342.0 294 59.2
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 5.3e-92 342.0 293 59.0
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 7.9e-88 328.2 191 82.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 2.3e-87 326.6 292 56.2
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.8e-83 312.0 208 74.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.0e-74 282.3 180 76.1
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 3.2e-73 279.6 269 55.8
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.0e-62 243.8 175 67.4
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 1.7e-61 240.7 243 57.2
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 6.5e-58 228.8 215 58.6
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 9.1e-52 208.4 382 38.7
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 3.2e-49 199.9 200 55.0
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 8.8e-47 191.8 283 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 2.0e-46 190.7 175 58.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.2e-45 187.2 112 81.2
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 6.1e-40 169.1 274 38.0
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 6.8e-39 165.6 120 68.3
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 9.1e-36 155.2 232 45.7
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.0e-30 137.5 95 72.6
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.9e-29 132.9 244 35.7
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.8e-26 123.2 286 32.5
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 2.2e-21 107.5 57 89.5
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.0e-19 100.9 134 45.5
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 6.8e-15 85.9 45 84.4
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 2.7e-11 73.9 55 63.6
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 4.6e-11 73.2 76 52.6
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 2.1e-08 64.3 30 86.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.7e-08 63.2 41 78.0
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 6.2e-08 62.8 49 61.2
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 2.0e-06 57.8 85 50.6


User provided reference genes

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