Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 0.0e+00 1075.8 526 100.0
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 4.6e-201 704.9 512 71.7
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 7.9e-201 704.1 518 70.8
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 5.7e-191 671.4 518 65.4
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.3e-190 670.2 528 65.2
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 5.9e-188 661.4 519 64.7
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 2.9e-187 659.1 519 65.1
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 6.5e-187 657.9 519 64.0
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 6.5e-187 657.9 520 65.0
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 1.4e-186 656.8 521 63.7
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 9.4e-186 654.1 551 62.6
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 2.1e-185 652.9 517 64.6
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 1.5e-183 646.7 522 64.0
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 2.6e-183 646.0 515 66.8
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 9.7e-183 644.0 500 65.8
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 1.3e-182 643.7 500 65.8
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.3e-182 643.7 524 63.4
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 1.7e-182 643.3 519 63.2
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 2.8e-182 642.5 521 64.1
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 8.2e-182 641.0 515 64.3
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 2.4e-181 639.4 509 64.0
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 7.0e-181 637.9 517 63.2
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 7.0e-181 637.9 523 62.9
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 9.1e-181 637.5 524 62.6
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.6e-180 636.0 529 63.5
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 7.7e-180 634.4 520 63.1
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 1.3e-179 633.6 508 63.8
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.7e-179 633.3 519 62.4
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 3.8e-179 632.1 514 63.4
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 5.0e-179 631.7 519 61.5
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.2e-177 627.1 497 64.4
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 4.7e-177 625.2 517 62.9
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 1.8e-176 623.2 516 61.2
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 2.3e-176 622.9 517 62.5
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 5.2e-176 621.7 493 65.1
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 5.2e-176 621.7 516 62.0
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 6.7e-176 621.3 515 63.3
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 2.0e-175 619.8 517 61.3
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 3.3e-175 619.0 518 61.0
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 4.8e-174 615.1 517 61.3
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 1.8e-173 613.2 497 65.6
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 7.0e-173 611.3 517 62.3
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 2.9e-171 605.9 517 59.4
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.8e-171 605.5 502 62.0
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 8.5e-171 604.4 517 60.9
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 1.5e-167 593.6 520 59.8
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 1.5e-167 593.6 511 60.1
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 2.0e-167 593.2 519 58.6
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 5.7e-167 591.7 525 61.7
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 1.7e-166 590.1 518 58.5
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 1.4e-165 587.0 524 58.0
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 1.4e-165 587.0 519 56.1
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.0e-163 580.9 515 59.8
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 1.7e-163 580.1 482 62.0
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 2.2e-163 579.7 514 59.7
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 3.8e-163 578.9 518 58.9
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 6.5e-163 578.2 515 56.5
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 6.5e-163 578.2 508 60.2
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 3.2e-162 575.9 520 59.0
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 7.2e-162 574.7 440 65.0
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 9.4e-162 574.3 522 58.0
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.2e-161 573.9 515 58.6
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.7e-161 572.8 496 59.9
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 6.1e-161 571.6 500 59.0
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.0e-160 570.9 521 56.8
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 6.8e-160 568.2 516 57.0
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 8.8e-160 567.8 523 57.7
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 2.0e-159 566.6 514 59.1
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 3.4e-159 565.8 519 57.4
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 7.5e-159 564.7 476 63.2
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 1.1e-157 560.8 516 56.6
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.8e-157 560.1 457 61.9
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 4.1e-157 558.9 457 62.1
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 1.2e-156 557.4 477 61.6
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 5.9e-156 555.1 516 55.8
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 1.0e-155 554.3 520 57.1
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 1.7e-155 553.5 515 57.3
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 2.9e-155 552.7 494 57.9
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 3.8e-155 552.4 517 57.4
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 6.6e-155 551.6 530 55.7
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 1.5e-154 550.4 516 56.6
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 1.5e-154 550.4 516 56.6
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 1.9e-154 550.1 516 56.6
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 1.9e-154 550.1 538 56.7
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 3.3e-154 549.3 521 55.9
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 5.6e-154 548.5 514 55.6
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 1.4e-152 543.9 516 56.2
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 3.0e-152 542.7 516 56.0
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 6.8e-152 541.6 514 57.4
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 1.7e-147 526.9 517 54.0
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 3.9e-147 525.8 519 54.9
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 9.5e-146 521.2 480 57.3
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 1.3e-139 500.7 452 58.6
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 4.9e-134 482.3 530 50.2
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 2.7e-132 476.5 554 48.9
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 3.5e-132 476.1 525 50.7
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 3.0e-131 473.0 518 52.1
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 3.9e-123 446.0 519 49.5
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 2.8e-121 439.9 567 44.3
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 2.0e-119 433.7 512 46.5
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.6e-119 433.3 337 65.3
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 1.0e-115 421.4 552 44.4
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 9.0e-112 408.3 436 52.1
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 7.6e-111 405.2 379 57.0
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 8.1e-105 385.2 420 51.0
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 4.5e-103 379.4 335 58.8
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 2.4e-96 357.1 518 42.1
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 3.1e-96 356.7 303 62.0
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 7.9e-92 342.0 516 43.0
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 8.5e-78 295.4 313 51.8
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 3.1e-64 250.4 148 78.4
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 8.8e-59 232.3 337 43.3
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.1e-58 231.9 395 35.9
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 1.1e-58 231.9 475 33.3
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 8.2e-57 225.7 855 26.0
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.3e-38 165.2 118 66.9
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 3.3e-37 160.6 356 31.5
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.4e-34 150.6 95 72.6
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 7.5e-26 122.9 164 47.0
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.7e-25 121.7 73 78.1
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.7e-17 95.1 148 41.2
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 1.2e-10 72.4 121 38.8


User provided reference genes

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