Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06376 Selenicereus undatus HOM05D002925 ORTHO05D003247 3.2e-156 555.1 287 100.0
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.2e-55 218.4 171 67.3
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.9e-54 214.9 170 65.3
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.4e-53 214.2 292 48.3
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 2.6e-52 209.9 292 52.4
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.3e-43 181.0 298 40.3
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 8.2e-43 178.3 143 61.5
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 2.6e-41 173.3 318 37.4
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 5.9e-41 172.2 331 37.5
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.0e-40 171.4 314 39.8
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 5.0e-40 169.1 292 42.5
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.9e-39 167.2 176 48.3
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 3.2e-39 166.4 296 40.5
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 3.2e-39 166.4 328 36.9
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 7.2e-39 165.2 314 36.9
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 9.4e-39 164.9 300 39.0
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 1.4e-37 161.0 299 37.5
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.8e-37 160.6 332 36.1
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 3.0e-37 159.8 299 39.5
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 3.0e-37 159.8 303 38.6
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 5.2e-37 159.1 323 37.2
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 5.2e-37 159.1 351 35.0
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 6.8e-37 158.7 305 37.4
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 8.8e-37 158.3 325 37.5
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 8.8e-37 158.3 320 38.8
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.2e-36 157.9 303 37.3
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 1.2e-36 157.9 298 37.6
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 1.2e-36 157.9 339 37.2
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.5e-36 157.5 276 38.8
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.0e-36 157.1 332 35.8
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.0e-36 157.1 332 35.8
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.6e-36 156.8 270 40.0
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 2.6e-36 156.8 300 38.7
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 2.6e-36 156.8 278 39.9
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 4.4e-36 156.0 287 38.7
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 4.4e-36 156.0 304 36.8
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 5.7e-36 155.6 311 38.3
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 5.7e-36 155.6 287 38.0
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 7.5e-36 155.2 292 39.4
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 9.7e-36 154.8 315 37.1
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 1.3e-35 154.5 301 37.9
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 1.7e-35 154.1 308 37.3
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 2.8e-35 153.3 319 35.1
TPR.G36116 Trifolium pratense HOM05D002925 ORTHO05D003247 2.8e-35 153.3 278 39.2
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 3.7e-35 152.9 299 34.8
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 8.3e-35 151.8 325 36.6
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.1e-34 151.4 268 40.7
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.4e-34 151.0 279 39.1
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 1.4e-34 151.0 308 35.7
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.4e-34 151.0 303 36.0
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.8e-34 150.6 285 37.5
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-34 150.6 346 34.7
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 1.8e-34 150.6 294 38.1
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 5.3e-34 149.1 273 39.9
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 5.3e-34 149.1 334 35.3
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 9.1e-34 148.3 302 37.1
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 1.6e-33 147.5 363 35.3
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 2.7e-33 146.7 263 38.8
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 5.9e-33 145.6 306 34.3
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 1.7e-32 144.1 323 35.3
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 2.2e-32 143.7 303 38.0
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 2.2e-32 143.7 303 38.0
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 6.5e-32 142.1 296 37.5
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 8.5e-32 141.7 309 35.6
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.5e-31 141.0 287 38.0
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 3.2e-31 139.8 274 38.0
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 3.2e-31 139.8 202 43.1
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 4.2e-31 139.4 128 54.7
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 4.2e-31 139.4 367 33.8
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 4.2e-31 139.4 283 35.3
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 4.2e-31 139.4 151 49.7
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 9.4e-31 138.3 140 50.7
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 1.2e-30 137.9 274 39.4
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 1.2e-30 137.9 303 36.3
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 3.6e-30 136.3 303 35.3
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 4.7e-30 136.0 314 36.9
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 1.4e-29 134.4 300 33.7
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 1.4e-29 134.4 326 35.0
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.4e-29 134.4 336 33.9
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.8e-29 134.0 294 34.4
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-29 134.0 146 47.9
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.8e-29 134.0 324 34.6
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.0e-29 133.3 125 52.0
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 3.0e-29 133.3 318 33.6
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 4.0e-29 132.9 313 35.1
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 8.8e-29 131.7 323 35.3
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 8.8e-29 131.7 125 51.2
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.5e-28 131.0 148 48.0
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 2.0e-28 130.6 302 33.4
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 2.0e-28 130.6 289 34.9
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 3.4e-28 129.8 339 32.2
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.4e-28 129.4 148 48.0
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.4e-28 129.4 148 48.6
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 5.7e-28 129.0 325 33.5
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 5.7e-28 129.0 148 48.6
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 7.5e-28 128.6 299 35.5
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 9.8e-28 128.3 351 32.2
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.3e-27 127.9 148 48.0
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 1.3e-27 127.9 125 52.0
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 1.7e-27 127.5 314 32.5
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 1.7e-27 127.5 134 49.3
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 2.8e-27 126.7 140 46.4
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 3.7e-27 126.3 297 34.0
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 8.3e-27 125.2 308 33.8
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.1e-26 124.8 313 34.8
Lalb_Chr11g0065401 Lupinus albus HOM05D002925 ORTHO05D003247 1.4e-26 124.4 137 50.4
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 1.4e-26 124.4 144 45.8
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 2.4e-26 123.6 131 48.9
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.4e-26 123.6 132 47.7
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 4.1e-26 122.9 132 47.0
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 5.4e-26 122.5 138 46.4
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 5.4e-26 122.5 362 31.2
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 1.2e-25 121.3 358 31.0
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 2.0e-25 120.6 180 39.4
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 2.7e-25 120.2 334 32.3
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 3.5e-25 119.8 163 39.9
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 4.5e-25 119.4 139 46.0
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 4.5e-25 119.4 319 34.8
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 7.7e-25 118.6 297 33.3
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 7.7e-25 118.6 127 47.2
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.3e-24 117.9 354 29.7
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 1.7e-24 117.5 196 36.7
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 2.3e-24 117.1 121 47.1
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 2.9e-24 116.7 146 43.2
Lsat_1_v5_gn_5_108081 Lactuca sativa HOM05D002925 ORTHO05D003247 5.0e-24 115.9 316 31.6
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 1.1e-23 114.8 314 32.8
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.5e-23 114.4 313 32.9
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 1.9e-23 114.0 297 31.3
Cpa.g.sc42.36 Carica papaya HOM05D002925 ORTHO05D003247 3.3e-23 113.2 290 33.8
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 3.3e-23 113.2 314 32.8
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 5.5e-23 112.5 296 33.8
HanXRQChr16g0514751 Helianthus annuus HOM05D002925 ORTHO05D003247 5.5e-23 112.5 148 42.6
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 9.5e-23 111.7 362 28.5
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 9.5e-23 111.7 118 50.0
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 1.6e-22 110.9 146 43.2
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 1.6e-22 110.9 146 43.2
BcaC06g34950 Brassica carinata HOM05D002925 ORTHO05D003247 3.6e-22 109.8 212 36.3
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 3.6e-22 109.8 305 34.1
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 4.7e-22 109.4 99 49.5
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 6.1e-22 109.0 228 32.9
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 1.0e-21 108.2 335 31.3
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 1.4e-21 107.8 343 31.5
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.3e-21 107.1 307 30.9
Aa31LG7G6230 Aethionema arabicum HOM05D002925 ORTHO05D003247 3.0e-21 106.7 144 38.9
vmacro01831 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 5.2e-21 105.9 139 44.6
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 1.2e-20 104.8 341 29.6
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 2.6e-20 103.6 311 29.9
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 3.4e-20 103.2 310 31.3
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 3.4e-20 103.2 207 32.4
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 4.4e-20 102.8 166 39.2
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.4e-20 102.8 99 45.5
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 4.4e-20 102.8 99 45.5
CARHR022690 Cardamine hirsuta HOM05D002925 ORTHO05D003247 5.7e-20 102.4 162 37.0
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.7e-20 102.4 99 45.5
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 1.3e-19 101.3 157 36.3
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 2.2e-19 100.5 258 29.5
Thecc.02G136800 Theobroma cacao HOM05D002925 ORTHO05D003247 2.2e-19 100.5 123 46.3
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 2.8e-19 100.1 93 47.3
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 4.9e-19 99.4 92 47.8
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 6.3e-19 99.0 147 40.8
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 8.3e-19 98.6 346 26.6
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 1.1e-18 98.2 106 41.5
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 1.4e-18 97.8 162 34.6
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 1.4e-18 97.8 198 35.9
ECA234G1059 Erigeron canadensis HOM05D002925 ORTHO05D003247 3.2e-18 96.7 181 34.3
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 3.2e-18 96.7 231 33.8
HanXRQChr11g0338071 Helianthus annuus HOM05D002925 ORTHO05D003247 5.4e-18 95.9 130 38.5
Os08g0485600 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 5.4e-18 95.9 256 29.3
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 7.8e-17 92.0 309 28.2
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 1.0e-16 91.7 353 28.9
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 2.9e-16 90.1 308 28.9
Lsat_1_v5_gn_7_82001 Lactuca sativa HOM05D002925 ORTHO05D003247 2.9e-16 90.1 137 35.8
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 2.5e-15 87.0 98 42.9
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 5.6e-15 85.9 99 42.4
RcHm_v2.0_Chr6g0271611 Rosa chinensis HOM05D002925 ORTHO05D003247 1.6e-14 84.3 107 47.7
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.1e-14 84.0 272 30.5
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 6.1e-14 82.4 299 30.8
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 2.3e-13 80.5 351 25.6
SEGI_07396 Sequoiadendron giganteum HOM05D002925 ORTHO05D003247 2.0e-12 77.4 89 37.1
Os09g0473350 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 2.6e-12 77.0 251 29.1
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 4.9e-11 72.8 183 27.9
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.0e-10 68.9 315 28.3


User provided reference genes

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