Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 7.8e-212 740.3 390 100.0
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-145 520.4 302 86.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.2e-145 519.6 305 86.6
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.9e-142 509.2 322 81.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.5e-141 506.1 318 81.4
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.5e-141 506.1 317 82.0
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.5e-141 505.0 314 83.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 9.4e-141 504.2 318 81.1
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.1e-140 503.1 323 78.9
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 4.7e-140 501.9 308 84.1
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 4.7e-140 501.9 318 79.9
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.0e-139 500.7 317 81.4
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.4e-139 500.4 318 80.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.8e-139 500.0 319 80.9
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.2e-138 497.3 305 83.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.2e-138 497.3 305 82.3
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.0e-138 496.5 314 80.9
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.0e-138 496.5 318 78.9
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.6e-138 496.1 319 79.9
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.4e-138 495.7 303 81.8
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 5.7e-138 495.0 315 80.3
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 5.7e-138 495.0 325 79.1
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 5.7e-138 495.0 318 79.6
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.3e-137 493.8 318 78.9
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.2e-137 493.0 316 80.1
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 3.7e-137 492.3 317 79.2
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.7e-137 492.3 318 78.9
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 6.3e-137 491.5 326 77.9
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 6.3e-137 491.5 313 81.5
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 8.3e-137 491.1 311 81.0
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.8e-136 490.0 313 80.8
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.1e-136 489.2 313 81.2
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 3.1e-136 489.2 315 80.0
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.1e-136 488.8 318 79.6
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 9.2e-136 487.6 315 80.6
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.6e-135 486.9 318 79.2
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.0e-135 486.5 318 78.6
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 2.0e-135 486.5 309 79.6
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 2.7e-135 486.1 321 79.1
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 4.5e-135 485.3 318 78.6
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 5.9e-135 485.0 314 77.4
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.3e-134 483.8 311 79.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.3e-134 483.0 315 79.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 2.9e-134 482.6 316 76.9
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.1e-133 480.7 313 78.6
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-133 479.6 322 78.0
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 3.3e-133 479.2 318 76.1
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 4.3e-133 478.8 311 79.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 5.6e-133 478.4 358 70.9
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.2e-132 477.2 302 81.1
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.1e-132 476.5 314 79.3
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.6e-132 475.7 302 80.8
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 4.7e-132 475.3 312 77.6
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.0e-131 474.2 318 76.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.4e-131 473.8 306 80.1
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.4e-131 473.8 311 79.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.3e-131 473.0 322 78.6
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 4.0e-131 472.2 316 75.6
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.2e-131 471.9 318 77.0
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 6.8e-131 471.5 319 74.0
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 8.9e-131 471.1 319 73.7
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 8.9e-131 471.1 319 73.7
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 8.9e-131 471.1 319 73.7
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 8.9e-131 471.1 352 72.2
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.2e-130 470.7 318 76.7
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.2e-130 470.7 306 77.5
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 2.0e-130 469.9 317 75.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.4e-130 469.2 315 74.3
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 4.4e-130 468.8 314 74.2
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 4.4e-130 468.8 314 74.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.7e-130 468.4 319 76.2
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 5.7e-130 468.4 319 73.7
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.7e-130 468.4 317 75.7
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 7.5e-130 468.0 312 75.6
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.7e-129 466.8 314 73.9
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-129 466.8 314 73.9
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.7e-129 466.8 314 73.9
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.2e-129 466.5 323 73.4
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.9e-129 466.1 317 75.7
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 3.7e-129 465.7 316 74.7
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 8.3e-129 464.5 313 76.0
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-128 463.8 313 76.0
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.8e-128 463.4 298 79.9
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.4e-128 463.0 303 75.9
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.6e-127 460.3 311 74.6
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 2.0e-127 459.9 306 75.5
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.7e-127 459.5 318 74.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.5e-127 459.1 314 76.1
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 4.6e-127 458.8 324 72.2
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.3e-126 457.2 318 74.5
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.3e-126 457.2 315 76.5
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 6.6e-126 454.9 296 77.4
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 8.6e-126 454.5 329 70.5
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.8e-124 449.5 315 74.3
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.8e-123 446.8 311 75.2
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.8e-123 446.8 302 74.8
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.5e-122 443.7 319 73.0
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.7e-121 439.1 320 73.1
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 6.4e-121 438.3 258 83.7
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.9e-120 436.8 316 72.5
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 3.2e-120 436.0 316 72.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 5.4e-120 435.3 316 72.2
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 7.3e-117 424.9 324 70.1
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 7.3e-117 424.9 325 69.5
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 9.5e-117 424.5 324 70.1
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.6e-116 422.5 329 69.6
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 4.0e-115 419.1 269 78.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.2e-115 418.7 329 69.0
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.9e-115 417.9 325 69.5
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 8.4e-105 384.8 287 66.9
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.6e-103 380.6 278 69.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.3e-102 377.5 255 76.5
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.1e-100 370.2 233 79.8
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 6.2e-100 368.6 233 80.3
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 8.1e-100 368.2 320 64.4
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 5.2e-99 365.5 301 60.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.8e-98 362.1 292 67.8
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.3e-97 360.9 282 63.1
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.4e-96 356.7 303 60.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.2e-96 355.9 235 76.2
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.1e-95 353.6 280 71.1
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.7e-94 350.5 301 58.8
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 2.8e-92 343.2 227 76.7
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 5.8e-82 308.9 243 63.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.6e-77 292.4 244 65.2
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 6.5e-73 278.9 302 48.0
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.5e-69 267.7 149 86.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 9.6e-69 265.0 317 50.8
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 8.2e-68 261.9 297 46.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 9.3e-64 248.4 165 78.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.7e-53 211.8 159 69.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.3e-52 211.5 230 47.8
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.1e-43 181.8 112 80.4
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 8.5e-41 172.2 295 36.6
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 5.2e-38 162.9 399 32.3
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-34 151.4 193 48.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.9e-32 144.4 87 80.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.5e-32 142.9 87 79.3
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.5e-32 142.9 87 79.3
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.2e-31 141.7 97 78.4
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 3.6e-31 140.2 95 78.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.0e-30 138.7 82 82.9
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 8.3e-28 129.0 114 62.3
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.8e-19 101.3 73 72.6
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.0e-14 84.0 53 75.5
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 8.9e-14 82.4 69 66.7
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.5e-13 81.6 83 57.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.2e-11 73.9 60 66.7
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.2e-10 72.0 48 72.9
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.2e-10 72.0 48 72.9
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.3e-09 68.6 49 69.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.0e-06 57.0 85 40.0


User provided reference genes

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