Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 8.6e-163 577.0 310 100.0
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 4.1e-96 355.5 275 65.1
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 6.9e-96 354.8 270 65.9
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.8e-88 330.1 287 60.3
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 6.3e-81 305.1 265 56.6
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 1.3e-78 297.4 264 53.8
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 1.3e-78 297.4 265 55.5
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 1.7e-78 297.0 267 57.7
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 2.2e-78 296.6 263 53.6
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 6.5e-78 295.0 269 54.3
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 2.5e-77 293.1 227 65.2
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 1.6e-76 290.4 267 53.9
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 4.7e-76 288.9 264 53.8
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 4.0e-75 285.8 263 53.2
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 2.2e-73 280.0 260 50.8
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 2.8e-73 279.6 264 52.7
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 3.7e-73 279.3 272 51.8
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 8.2e-73 278.1 263 53.2
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 2.4e-72 276.6 266 51.5
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 1.6e-71 273.9 256 50.4
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 2.7e-71 273.1 265 52.8
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 4.5e-71 272.3 265 49.4
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 7.7e-71 271.6 265 49.4
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 2.9e-70 269.6 248 53.2
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 3.8e-70 269.2 266 54.1
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 8.5e-70 268.1 252 50.8
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 8.5e-70 268.1 269 47.2
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 1.9e-69 266.9 264 51.1
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 3.2e-69 266.2 206 66.5
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 5.5e-69 265.4 264 48.1
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 7.2e-69 265.0 215 58.1
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.1e-68 263.5 256 51.6
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 1.0e-67 261.2 237 54.0
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 2.3e-67 260.0 265 48.7
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 5.2e-67 258.8 252 52.8
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.2e-66 257.7 264 50.8
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 1.2e-66 257.7 290 45.5
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 1.2e-66 257.7 271 48.7
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.5e-66 257.3 264 51.1
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 3.4e-66 256.1 264 51.1
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 3.4e-66 256.1 265 50.2
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 3.4e-66 256.1 264 50.8
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 7.5e-66 255.0 268 48.5
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 9.8e-66 254.6 255 49.4
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 2.2e-65 253.4 265 50.2
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 4.8e-65 252.3 265 48.7
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 8.3e-65 251.5 267 49.1
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 1.1e-64 251.1 266 49.2
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 2.4e-64 250.0 245 51.0
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 4.1e-64 249.2 267 47.9
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 4.1e-64 249.2 267 47.6
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 5.4e-64 248.8 242 52.9
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 9.1e-64 248.1 271 49.4
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 2.0e-63 246.9 170 71.2
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 2.0e-63 246.9 265 48.7
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 2.0e-63 246.9 272 48.5
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 3.5e-63 246.1 266 47.7
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 1.7e-62 243.8 264 47.7
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 3.8e-62 242.7 266 47.7
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.1e-61 241.1 264 49.2
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 2.5e-61 240.0 265 47.2
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 5.5e-61 238.8 253 48.2
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 5.5e-61 238.8 255 47.5
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 9.5e-61 238.0 204 56.4
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.1e-60 236.9 204 56.4
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 6.1e-60 235.3 255 47.5
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 2.0e-58 230.3 270 45.2
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 2.0e-58 230.3 224 49.6
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 5.7e-58 228.8 264 46.2
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 7.5e-58 228.4 267 45.3
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.3e-57 227.6 251 47.0
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 5.4e-56 222.2 266 45.5
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 9.2e-56 221.5 229 48.0
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 9.2e-56 221.5 256 45.3
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.2e-55 221.1 215 50.7
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 1.2e-55 221.1 265 44.9
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 2.0e-55 220.3 265 44.5
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 4.5e-55 219.2 204 54.4
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 5.6e-53 212.2 183 57.4
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 1.0e-51 208.0 230 47.8
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 1.2e-50 204.5 267 40.4
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 7.5e-50 201.8 227 48.0
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.6e-47 194.1 224 45.1
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 6.0e-47 192.2 256 38.7
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.3e-46 191.0 231 44.2
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 1.7e-46 190.7 271 38.0
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 1.5e-45 187.6 210 47.1
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 4.3e-45 186.0 220 42.7
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 6.2e-44 182.2 260 37.7
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 8.0e-44 181.8 238 42.0
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 2.3e-43 180.3 258 39.9
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 1.5e-42 177.6 195 47.7
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 3.0e-38 163.3 172 46.5
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 1.5e-37 161.0 171 47.4
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 4.7e-36 156.0 139 58.3
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 1.5e-18 97.8 103 46.6
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 1.4e-16 91.3 85 52.9
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 5.1e-14 82.8 254 27.6
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 3.5e-07 60.1 47 55.3
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.0e-06 58.5 47 53.2


User provided reference genes

Program Settings