Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 0.0e+00 1663.3 893 100.0
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 2.9e-304 1048.5 913 66.0
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 4.3e-300 1034.6 912 65.0
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.5e-297 1026.2 868 65.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.3e-293 1012.3 911 63.9
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 3.4e-260 902.1 842 59.0
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 1.0e-256 890.6 905 58.2
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 7.2e-255 884.4 908 56.4
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.1e-250 870.5 904 55.8
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 5.0e-248 861.7 952 52.9
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 8.6e-248 860.9 975 52.4
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.1e-246 856.3 911 53.9
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.0e-245 854.0 940 52.1
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.4e-245 853.6 905 54.1
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 4.0e-245 852.0 908 54.5
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 6.8e-245 851.3 908 54.3
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.2e-244 850.5 970 51.3
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.7e-243 846.7 953 52.9
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 8.3e-243 844.3 952 51.6
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 2.0e-241 839.7 944 52.9
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 2.7e-241 839.3 970 51.4
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 3.5e-241 839.0 920 53.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 3.5e-241 839.0 905 54.0
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 4.7e-238 828.6 857 55.7
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 6.2e-238 828.2 969 51.1
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 5.2e-237 825.1 854 55.0
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.6e-236 822.8 878 54.3
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 3.7e-235 818.9 937 51.2
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.7e-235 818.9 914 51.4
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 4.9e-235 818.5 940 50.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 6.4e-235 818.1 910 52.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 8.3e-235 817.8 939 51.7
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.4e-234 817.0 851 54.6
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.4e-234 816.2 969 50.2
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 4.1e-234 815.5 938 50.0
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 5.4e-234 815.1 851 54.5
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 5.4e-234 815.1 943 49.5
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.6e-233 813.5 939 52.0
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 3.0e-232 809.3 852 54.1
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 3.9e-232 808.9 922 53.1
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.5e-231 807.0 949 50.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.1e-230 803.1 938 50.1
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 3.6e-230 802.4 962 50.8
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 4.7e-230 802.0 944 49.9
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.7e-230 802.0 941 51.4
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 6.2e-230 801.6 966 50.8
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 6.2e-230 801.6 839 54.4
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 8.1e-230 801.2 911 52.1
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 1.8e-229 800.0 886 52.7
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 2.0e-228 796.6 886 52.4
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 2.6e-228 796.2 935 50.9
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 2.2e-227 793.1 946 49.6
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 8.3e-227 791.2 949 51.1
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 3.5e-225 785.8 909 53.2
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.3e-224 783.9 852 52.3
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 5.1e-224 781.9 958 49.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.1e-223 780.8 912 49.2
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.5e-223 780.4 942 51.9
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 4.3e-223 778.9 955 50.2
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 4.3e-223 778.9 953 49.6
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 3.6e-222 775.8 880 52.4
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 3.1e-221 772.7 944 48.2
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 5.2e-221 771.9 930 49.5
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.2e-220 770.8 947 49.4
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 2.0e-220 770.0 868 52.5
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 9.9e-220 767.7 940 48.5
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 4.9e-219 765.4 906 51.3
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 1.4e-218 763.8 853 52.2
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 5.6e-215 751.9 912 50.4
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 3.6e-214 749.2 871 51.0
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 4.8e-214 748.8 894 49.7
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 9.0e-213 744.6 892 49.0
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 7.6e-212 741.5 864 51.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 9.9e-212 741.1 838 50.8
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 2.2e-211 740.0 868 51.2
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 3.8e-211 739.2 861 51.3
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 7.1e-210 734.9 859 51.5
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 9.3e-210 734.6 859 51.5
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 1.3e-208 730.7 887 49.5
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 1.2e-201 707.6 978 45.0
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 1.1e-197 694.5 868 49.7
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.4e-197 693.3 924 48.6
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 5.8e-196 688.7 855 47.5
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 4.2e-194 682.6 803 51.1
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 4.6e-193 679.1 779 50.3
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.0e-176 624.8 841 44.5
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 8.2e-174 615.1 858 44.5
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 2.0e-172 610.5 724 49.9
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 2.6e-172 610.1 775 47.6
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.7e-171 607.4 688 51.5
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 2.6e-167 593.6 739 47.5
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 6.7e-160 568.9 750 45.1
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 1.0e-152 545.0 917 39.9
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 4.1e-149 533.1 537 54.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 7.2e-146 522.3 510 54.7
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.8e-144 517.7 631 47.5
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.7e-139 501.1 453 57.0
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 8.6e-139 498.8 542 53.5
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 1.8e-136 491.1 909 40.3
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 1.0e-123 448.7 499 52.1
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 2.7e-116 424.1 464 51.5
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 3.6e-105 387.1 859 33.5
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.7e-84 317.8 353 56.1
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.0e-83 315.8 983 27.8
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.5e-82 312.0 739 31.7
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 1.3e-81 308.9 524 41.0
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 2.8e-81 307.8 267 59.9
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 2.9e-78 297.7 810 30.4
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 1.3e-70 272.3 228 67.5
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 2.5e-66 258.1 1062 26.6
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 4.6e-60 237.3 296 48.0
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 1.2e-55 222.6 157 73.2
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 2.8e-41 174.9 247 51.8
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.1e-36 158.7 163 55.2
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.3e-35 155.2 216 43.1
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 8.6e-22 110.2 66 74.2
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.7e-20 104.4 150 50.0
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 1.7e-17 95.9 55 80.0
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.3e-13 81.3 108 48.1
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.3e-11 75.5 157 38.9
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 6.8e-11 73.9 45 73.3
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 6.8e-11 73.9 45 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.2e-10 73.2 152 39.5
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.3e-09 69.7 841 23.5
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 2.9e-09 68.6 76 48.7
Aqoxy6G02680 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.7e-06 59.3 48 60.4


User provided reference genes

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