Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.2e-106 389.8 192 100.0
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 3.1e-62 242.3 192 65.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 1.2e-45 187.2 193 54.9
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.7e-44 183.3 189 52.9
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.7e-44 183.3 187 54.0
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 1.4e-43 180.3 197 51.3
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 7.2e-43 177.9 187 51.9
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 2.1e-42 176.4 197 50.3
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 6.1e-42 174.9 185 49.7
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 8.0e-42 174.5 161 57.1
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.0e-41 174.1 181 49.7
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.0e-41 174.1 177 52.0
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.8e-41 173.3 178 51.1
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 2.3e-41 172.9 182 52.2
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 3.0e-41 172.6 166 56.0
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 5.2e-41 171.8 161 56.5
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 5.2e-41 171.8 194 49.5
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 6.7e-41 171.4 183 49.7
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 8.8e-41 171.0 166 52.4
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 1.1e-40 170.6 197 48.7
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.5e-40 170.2 183 49.7
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.5e-40 170.2 183 48.6
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.5e-40 170.2 183 49.7
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.5e-40 170.2 197 48.7
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.5e-40 170.2 161 56.5
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.5e-40 170.2 161 56.5
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 2.0e-40 169.9 161 55.3
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 2.6e-40 169.5 171 53.2
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 2.6e-40 169.5 183 49.7
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 3.3e-40 169.1 163 53.4
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 3.3e-40 169.1 184 50.0
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 4.4e-40 168.7 194 49.0
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 5.7e-40 168.3 197 47.2
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 7.4e-40 167.9 165 53.3
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 7.4e-40 167.9 189 49.2
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 9.7e-40 167.5 161 55.3
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 9.7e-40 167.5 176 50.6
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 1.3e-39 167.2 197 47.2
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.3e-39 167.2 185 50.3
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.3e-39 167.2 166 51.8
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 1.7e-39 166.8 161 54.7
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 2.8e-39 166.0 188 48.9
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 4.8e-39 165.2 184 54.3
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 8.2e-39 164.5 161 52.8
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 8.2e-39 164.5 160 53.1
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 1.1e-38 164.1 166 53.0
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.1e-38 164.1 166 53.0
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.1e-38 164.1 166 53.0
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.4e-38 163.7 161 52.8
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.8e-38 163.3 165 50.9
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.8e-38 163.3 206 48.1
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 2.4e-38 162.9 190 46.8
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 2.4e-38 162.9 161 52.8
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 2.4e-38 162.9 184 46.7
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 3.1e-38 162.5 168 51.2
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 3.1e-38 162.5 182 49.5
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 3.1e-38 162.5 161 54.0
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 3.1e-38 162.5 167 52.1
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 4.1e-38 162.2 168 51.2
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 5.3e-38 161.8 165 50.3
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 7.0e-38 161.4 161 52.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 9.1e-38 161.0 190 46.8
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.6e-37 160.2 171 52.6
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.6e-37 160.2 164 50.6
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.6e-37 160.2 161 52.2
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 2.0e-37 159.8 183 50.3
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-37 159.8 164 51.2
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 2.6e-37 159.5 170 52.4
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 3.5e-37 159.1 164 50.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.5e-37 159.1 164 50.6
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.5e-37 159.1 186 47.3
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 3.5e-37 159.1 175 49.1
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 7.7e-37 157.9 161 49.1
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 7.7e-37 157.9 159 51.6
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 1.0e-36 157.5 164 50.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 1.7e-36 156.8 186 45.7
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 2.2e-36 156.4 176 47.7
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.2e-36 156.4 168 47.6
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.1e-35 154.1 160 50.6
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.1e-35 154.1 167 49.7
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 1.1e-35 154.1 160 51.9
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 1.9e-35 153.3 215 45.6
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 1.9e-35 153.3 164 49.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 2.5e-35 152.9 192 43.8
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 4.2e-35 152.1 161 49.7
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 5.5e-35 151.8 161 49.7
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.2e-34 150.6 186 44.1
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 2.7e-34 149.4 161 49.1
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 8.0e-34 147.9 173 47.4
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 8.0e-34 147.9 186 44.6
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 5.2e-33 145.2 163 46.6
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 2.0e-32 143.3 164 48.8
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 4.4e-32 142.1 185 46.5
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 4.4e-32 142.1 164 45.7
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 9.7e-32 141.0 172 44.8
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 9.7e-32 141.0 179 45.8
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.8e-31 138.7 154 50.0
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 4.1e-30 135.6 162 45.1
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 7.7e-29 131.3 148 49.3
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.0e-28 131.0 169 41.4
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-28 131.0 148 49.3
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 2.2e-28 129.8 184 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 3.6e-26 122.5 173 37.6
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 1.4e-25 120.6 58 87.9
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 4.5e-21 105.5 64 70.3
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.7e-20 103.6 155 38.1
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 2.3e-20 103.2 166 33.1
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.5e-19 100.5 71 66.2
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 6.1e-18 95.1 62 64.5
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 1.5e-16 90.5 52 78.8
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.6e-16 89.7 55 74.5
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 5.7e-16 88.6 54 75.9
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 1.7e-15 87.0 160 33.8
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.2e-13 80.9 56 66.1
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 3.5e-13 79.3 45 77.8
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 1.3e-12 77.4 149 32.9
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 3.8e-12 75.9 51 68.6
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 6.6e-12 75.1 75 50.7
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.1e-11 74.3 50 68.0
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 5.6e-11 72.0 183 29.0
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 2.1e-10 70.1 43 69.8


User provided reference genes

Program Settings