Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.7e-123 446.0 225 100.0
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.6e-105 386.3 195 98.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 5.8e-68 261.5 186 74.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.6e-65 251.9 199 66.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.8e-65 251.1 212 64.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 7.3e-63 244.6 212 62.7
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 9.6e-63 244.2 172 72.1
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-62 243.8 198 64.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-62 243.8 198 64.6
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.2e-62 241.5 198 64.1
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.1e-62 241.1 198 64.1
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.1e-62 241.1 198 64.1
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 9.0e-61 237.7 179 64.8
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.3e-59 233.8 180 64.4
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.9e-59 232.6 195 62.6
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 8.4e-59 231.1 221 54.8
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 8.4e-59 231.1 197 60.9
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.9e-58 229.9 193 62.7
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.4e-58 229.6 154 70.8
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.4e-58 229.6 198 59.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 7.1e-58 228.0 221 55.2
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.7e-57 226.1 187 63.1
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 3.9e-56 222.2 160 64.4
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.1e-55 220.7 215 57.2
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 7.4e-55 218.0 159 68.6
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 9.6e-55 217.6 164 64.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.1e-54 216.5 160 70.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 3.6e-54 215.7 226 55.3
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 3.6e-54 215.7 149 71.1
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 6.2e-54 214.9 164 61.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 3.1e-53 212.6 155 68.4
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.2e-52 210.7 154 66.2
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 7.6e-52 208.0 160 63.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-51 207.2 189 56.6
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-51 207.2 189 56.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.2e-51 206.5 155 63.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 2.9e-51 206.1 184 57.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.9e-51 206.1 184 57.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.8e-51 205.7 225 52.4
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 6.4e-51 204.9 207 53.1
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.4e-51 204.9 181 58.6
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.4e-51 204.5 155 63.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-50 204.1 189 57.1
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.4e-50 203.0 180 57.8
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.4e-50 203.0 226 53.1
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.2e-50 202.6 148 66.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.2e-50 202.2 180 57.8
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.1e-50 201.4 180 57.2
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 9.3e-50 201.1 126 73.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.2e-49 200.7 159 65.4
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.6e-49 200.3 126 73.0
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.1e-49 199.9 154 63.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 3.5e-49 199.1 208 51.4
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 6.0e-49 198.4 159 61.0
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.0e-48 197.6 180 56.1
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 5.1e-48 195.3 215 50.7
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 8.7e-48 194.5 154 65.6
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 8.7e-48 194.5 154 63.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 4.3e-47 192.2 148 62.2
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 5.6e-47 191.8 159 61.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 7.4e-47 191.4 155 60.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 9.6e-47 191.0 155 64.5
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.1e-46 189.9 155 60.6
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.1e-46 189.9 121 75.2
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 4.8e-46 188.7 159 55.3
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.2e-46 188.3 160 59.4
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 8.1e-46 188.0 159 55.3
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 8.1e-46 188.0 159 54.7
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 8.1e-46 188.0 155 60.0
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-45 187.6 162 57.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.1e-45 187.6 159 54.7
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.4e-45 187.2 159 55.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.4e-45 187.2 159 55.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.4e-45 187.2 159 55.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.4e-45 187.2 159 56.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.4e-45 186.4 162 57.4
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.4e-45 186.4 177 58.2
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 3.1e-45 186.0 159 54.7
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 3.1e-45 186.0 178 51.7
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.0e-45 185.7 159 55.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 4.0e-45 185.7 170 52.9
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 5.3e-45 185.3 168 53.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 6.9e-45 184.9 162 56.8
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 9.0e-45 184.5 158 61.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-43 181.0 160 59.4
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-43 181.0 160 59.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 6.5e-43 178.3 158 55.7
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.5e-42 175.3 144 61.1
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 7.1e-42 174.9 156 59.0
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.7e-41 172.9 144 60.4
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 6.0e-41 171.8 210 46.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.0e-40 171.0 134 58.2
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.3e-40 169.9 227 44.9
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.7e-40 168.3 93 83.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 4.3e-39 165.6 178 50.6
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.7e-39 165.2 148 52.7
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.8e-38 162.9 160 56.2
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 2.8e-38 162.9 230 45.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 3.7e-38 162.5 157 56.1
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.5e-36 157.1 128 60.9
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.6e-36 156.4 152 49.3
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 5.9e-36 155.2 135 55.6
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-35 154.5 127 58.3
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.4e-34 150.6 126 59.5
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.9e-34 150.2 136 58.1
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 6.1e-33 145.2 110 67.3
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.0e-32 142.9 146 49.3
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 8.7e-32 141.4 94 71.3
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 7.4e-31 138.3 158 48.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 8.2e-30 134.8 102 59.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 3.1e-29 132.9 104 59.6
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 9.0e-29 131.3 95 68.4
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 5.9e-28 128.6 91 67.0
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.2e-25 120.9 132 53.8
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 8.8e-24 114.8 80 61.2
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 5.7e-23 112.1 164 43.9
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 8.2e-22 108.2 106 54.7
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 8.8e-16 88.2 69 59.4
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 5.3e-13 79.0 134 38.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.3e-11 74.3 110 41.8
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.3e-11 74.3 86 47.7
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.8e-11 72.8 123 35.8
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.2e-10 69.3 102 45.1
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 9.4e-10 68.2 63 52.4
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 9.4e-10 68.2 63 52.4
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.2e-09 67.8 63 52.4
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 4.7e-09 65.9 63 50.8
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 8.0e-09 65.1 46 58.7
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 6.7e-08 62.0 121 38.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 6.3e-06 55.5 143 30.1


User provided reference genes

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