Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04301 Selenicereus undatus HOM05D003175 ORTHO05D003591 2.2e-64 248.8 127 100.0
EL10Ac6g15408 Beta vulgaris HOM05D003175 ORTHO05D003591 5.5e-23 111.3 76 75.0
Ah.14g083830 Amaranthus hybridus HOM05D003175 ORTHO05D003591 1.8e-21 106.3 73 72.6
MSTRG.5776 Avicennia marina HOM05D003175 ORTHO05D003591 8.7e-21 104.0 77 67.5
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 1.9e-20 102.8 64 75.0
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 2.5e-20 102.4 76 63.2
Ah.03g147100 Amaranthus hybridus HOM05D003175 ORTHO05D003591 3.3e-20 102.1 73 71.2
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 4.3e-20 101.7 49 98.0
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 4.3e-20 101.7 69 71.0
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 5.7e-20 101.3 76 68.4
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 5.7e-20 101.3 61 78.7
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 7.4e-20 100.9 76 68.4
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 7.4e-20 100.9 72 69.4
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 7.4e-20 100.9 63 79.4
Aa31LG1G18310 Aethionema arabicum HOM05D003175 ORTHO05D003591 9.7e-20 100.5 67 70.1
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.3e-19 100.1 77 68.8
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 1.3e-19 100.1 71 69.0
SGA_v2.0_scaffold337G49169 Striga asiatica HOM05D003175 ORTHO05D003591 1.3e-19 100.1 72 69.4
Duzib168G1627 Durio zibethinus HOM05D003175 ORTHO05D003591 1.6e-19 99.8 74 70.3
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 1.6e-19 99.8 49 93.9
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 1.6e-19 99.8 69 69.6
Hma1.2p1_1838F.1_g304840 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 1.6e-19 99.8 76 61.8
Lsat_1_v5_gn_5_142921 Lactuca sativa HOM05D003175 ORTHO05D003591 1.6e-19 99.8 69 71.0
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 2.2e-19 99.4 73 68.5
DCAR_003521 Daucus carota HOM05D003175 ORTHO05D003591 3.7e-19 98.6 76 67.1
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 3.7e-19 98.6 76 68.4
MELO3C015489.2 Cucumis melo HOM05D003175 ORTHO05D003591 4.8e-19 98.2 67 74.6
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 4.8e-19 98.2 77 66.2
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 6.3e-19 97.8 76 65.8
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 6.3e-19 97.8 63 74.6
Sc18g0002200 Simmondsia chinensis HOM05D003175 ORTHO05D003591 6.3e-19 97.8 76 65.8
CSS0001019 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 8.2e-19 97.4 68 69.1
Haze_04011 Corylus avellana HOM05D003175 ORTHO05D003591 8.2e-19 97.4 67 71.6
Haze_21391 Corylus avellana HOM05D003175 ORTHO05D003591 8.2e-19 97.4 67 71.6
Gohir.A05G030500 Gossypium hirsutum HOM05D003175 ORTHO05D003591 8.2e-19 97.4 77 66.2
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 8.2e-19 97.4 77 66.2
Hma1.2p1_1453F.1_g284310 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 8.2e-19 97.4 67 70.1
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 1.1e-18 97.1 57 82.5
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 1.1e-18 97.1 55 83.6
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 1.1e-18 97.1 55 83.6
THA.LOC104811748 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 1.1e-18 97.1 55 81.8
Thecc.09G086900 Theobroma cacao HOM05D003175 ORTHO05D003591 1.1e-18 97.1 77 67.5
CSS0022912 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 1.4e-18 96.7 68 69.1
CSS0031089 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 1.4e-18 96.7 71 66.2
Cpa.g.sc128.7 Carica papaya HOM05D003175 ORTHO05D003591 1.4e-18 96.7 69 66.7
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 1.4e-18 96.7 69 72.5
Rhsim03G0087900 Rhododendron simsii HOM05D003175 ORTHO05D003591 1.4e-18 96.7 66 68.2
THA.LOC104813493 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 1.4e-18 96.7 55 80.0
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 1.4e-18 96.7 79 63.3
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 1.8e-18 96.3 66 68.2
HanXRQChr12g0354621 Helianthus annuus HOM05D003175 ORTHO05D003591 1.8e-18 96.3 55 80.0
Peaxi162Scf01425g00001 Petunia axillaris HOM05D003175 ORTHO05D003591 1.8e-18 96.3 72 65.3
TWI73G0679 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.8e-18 96.3 58 79.3
AL52U10030 Arabidopsis lyrata HOM05D001215 ORTHO05D003591 2.4e-18 95.9 67 68.7
AL8G32800 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.4e-18 95.9 67 68.7
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 2.4e-18 95.9 65 76.9
Duzib150G0820 Durio zibethinus HOM05D003175 ORTHO05D003591 2.4e-18 95.9 57 80.7
Oeu011490.1 Olea europaea HOM05D003175 ORTHO05D003591 2.4e-18 95.9 77 63.6
CARHR270680 Cardamine hirsuta HOM05D003175 ORTHO05D003591 3.1e-18 95.5 72 65.3
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 3.1e-18 95.5 77 64.9
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 3.1e-18 95.5 58 77.6
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 3.1e-18 95.5 76 65.8
DCAR_031336 Daucus carota HOM05D003175 ORTHO05D003591 4.1e-18 95.1 67 68.7
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 4.1e-18 95.1 75 62.7
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 4.1e-18 95.1 77 64.9
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.1e-18 95.1 72 65.3
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 4.1e-18 95.1 58 77.6
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 4.1e-18 95.1 62 74.2
AT5G56940 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 5.3e-18 94.7 67 67.2
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 5.3e-18 94.7 77 64.9
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 5.3e-18 94.7 61 73.8
Carub.0008s1742 Capsella rubella HOM05D003175 ORTHO05D003591 6.9e-18 94.4 66 66.7
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 6.9e-18 94.4 59 76.3
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 6.9e-18 94.4 69 71.0
SEGI_17182 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 6.9e-18 94.4 83 61.4
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 6.9e-18 94.4 65 67.7
CSS0037416 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 9.0e-18 94.0 68 67.6
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 9.0e-18 94.0 68 69.1
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 9.0e-18 94.0 68 67.6
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 9.0e-18 94.0 68 67.6
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 9.0e-18 94.0 68 67.6
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 9.0e-18 94.0 76 64.5
vmacro23436 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 9.0e-18 94.0 66 66.7
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 1.2e-17 93.6 72 63.9
CSS0031311 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 1.2e-17 93.6 71 64.8
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.2e-17 93.6 68 67.6
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 1.2e-17 93.6 73 63.0
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 1.5e-17 93.2 63 69.8
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 1.5e-17 93.2 49 85.7
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 2.0e-17 92.8 68 67.6
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 2.0e-17 92.8 68 67.6
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 2.0e-17 92.8 69 65.2
PGSC0003DMG400022985 Solanum tuberosum HOM05D003175 ORTHO05D003591 2.0e-17 92.8 68 66.2
TAR371G0179 Trochodendron aralioides HOM05D003175 ORTHO05D003591 2.0e-17 92.8 76 59.2
Cfa006747 Carpinus fangiana HOM05D003175 ORTHO05D003591 2.6e-17 92.4 67 70.1
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 3.4e-17 92.0 76 61.8
Thhalv10014987m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 3.4e-17 92.0 73 65.8
Nn8g40845 Nelumbo nucifera HOM05D003175 ORTHO05D003591 3.4e-17 92.0 72 61.1
Sp6g18640 Schrenkiella parvula HOM05D003175 ORTHO05D003591 3.4e-17 92.0 73 65.8
A10p14260 Brassica napus HOM05D003175 ORTHO05D003591 7.6e-17 90.9 64 70.3
BraA10t43517Z Brassica rapa HOM05D003175 ORTHO05D003591 7.6e-17 90.9 64 70.3
CANSAT11G2123 Cannabis sativa HOM05D003175 ORTHO05D003591 7.6e-17 90.9 69 68.1
Dinv36778 Davidia involucrata HOM05D003175 ORTHO05D003591 1.0e-16 90.5 49 83.7
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 1.0e-16 90.5 49 79.6
BcaB08g36038 Brassica carinata HOM05D003175 ORTHO05D003591 1.3e-16 90.1 73 65.8
BcaC03g14195 Brassica carinata HOM05D003175 ORTHO05D003591 1.7e-16 89.7 47 89.4
A02p08860 Brassica napus HOM05D003175 ORTHO05D003591 1.7e-16 89.7 47 89.4
C02p14770 Brassica napus HOM05D003175 ORTHO05D003591 1.7e-16 89.7 47 89.4
BolC2t07606H Brassica oleracea HOM05D003175 ORTHO05D003591 1.7e-16 89.7 47 89.4
BraA02t05955Z Brassica rapa HOM05D003175 ORTHO05D003591 1.7e-16 89.7 47 89.4
Os08g0517900 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 1.7e-16 89.7 74 60.8
Os09g0498100 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 1.7e-16 89.7 61 68.9
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 1.7e-16 89.7 63 68.3
Zm00001eb317180 Zea mays HOM05D003175 ORTHO05D003591 1.7e-16 89.7 66 65.2
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 2.2e-16 89.4 48 83.3
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 2.2e-16 89.4 66 68.2
TPR.G10463 Trifolium pratense HOM05D003175 ORTHO05D003591 2.9e-16 89.0 59 71.2
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 2.9e-16 89.0 63 68.3
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 3.8e-16 88.6 55 76.4
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 5.0e-16 88.2 67 65.7
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 5.0e-16 88.2 67 65.7
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 5.0e-16 88.2 49 81.6
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 6.5e-16 87.8 69 62.3
PSO017G4091 Papaver somniferum HOM05D003175 ORTHO05D003591 6.5e-16 87.8 46 87.0
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 8.5e-16 87.4 69 68.1
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.4e-15 86.7 47 80.9
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.4e-15 86.7 46 84.8
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 1.4e-15 86.7 46 84.8
VMungo0251G0230 Vigna mungo HOM05D003175 ORTHO05D003591 1.4e-15 86.7 49 81.6
ATR0724G037 Amborella trichopoda HOM05D003175 ORTHO05D003591 1.9e-15 86.3 55 74.5
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 2.5e-15 85.9 76 59.2
Duzib187G0793 Durio zibethinus HOM05D003175 ORTHO05D003591 4.2e-15 85.1 49 83.7
Hma1.2p1_3088F.1_g332510 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 4.2e-15 85.1 76 55.3
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 4.2e-15 85.1 64 60.9
SGA_v2.0_scaffold49G18150 Striga asiatica HOM05D003175 ORTHO05D003591 4.2e-15 85.1 49 79.6
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 5.5e-15 84.7 47 83.0
vmacro06300 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 5.5e-15 84.7 72 58.3
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 7.2e-15 84.3 46 82.6
Psat1g140000 Pisum sativum HOM05D003175 ORTHO05D003591 7.2e-15 84.3 69 59.4
CDE06G2360 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 1.6e-14 83.2 73 58.9
CDE02G0210 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 2.7e-14 82.4 61 68.9
Medtr5g014070 Medicago truncatula HOM05D003175 ORTHO05D003591 3.6e-14 82.0 67 56.7
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 1.8e-13 79.7 46 80.4
BcaC01g06456 Brassica carinata HOM05D003175 ORTHO05D003591 2.3e-13 79.3 73 57.5
BcaNung05244 Brassica carinata HOM05D003175 ORTHO05D003591 2.3e-13 79.3 73 57.5
C03p15250 Brassica napus HOM05D003175 ORTHO05D003591 2.3e-13 79.3 73 57.5
BolC9t57700H Brassica oleracea HOM05D003175 ORTHO05D003591 3.9e-13 78.6 53 71.7
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 1.9e-12 76.3 46 76.1
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 5.3e-10 68.2 49 65.3
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 2.0e-09 66.2 83 48.2
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 3.2e-07 58.9 50 56.0
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 3.2e-07 58.9 72 48.6
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 1.2e-06 57.0 50 56.0
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 1.6e-06 56.6 50 58.0
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.7e-06 55.8 50 54.0
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 4.7e-06 55.1 50 54.0
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 4.7e-06 55.1 50 54.0
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 4.7e-06 55.1 50 54.0
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 6.1e-06 54.7 50 54.0
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 6.1e-06 54.7 50 52.0
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 6.1e-06 54.7 50 52.0
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 6.1e-06 54.7 50 54.0
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 6.1e-06 54.7 50 54.0


User provided reference genes

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