Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 8.1e-111 403.7 192 100.0
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.2e-107 391.7 192 95.3
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 9.2e-107 390.2 192 94.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 2.1e-106 389.0 192 94.3
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 2.1e-106 389.0 192 94.3
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.5e-106 388.3 192 95.3
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 192 95.3
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.0e-105 386.7 192 94.3
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.3e-105 386.3 192 93.8
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.3e-105 386.3 189 95.2
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.7e-105 386.0 192 94.8
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 3.9e-105 384.8 193 93.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.9e-105 384.8 188 95.2
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 5.1e-105 384.4 192 93.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 6.6e-105 384.0 192 93.8
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 6.6e-105 384.0 192 93.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 6.6e-105 384.0 192 93.2
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 6.6e-105 384.0 188 95.2
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 8.6e-105 383.6 188 94.7
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 8.6e-105 383.6 188 94.7
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 8.6e-105 383.6 188 94.7
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 8.6e-105 383.6 192 93.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.3e-104 381.7 184 96.2
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 4.3e-104 381.3 192 93.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 4.3e-104 381.3 188 93.6
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.3e-104 380.6 192 92.7
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.5e-104 380.2 192 92.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 9.5e-104 380.2 192 90.6
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.2e-103 379.8 188 94.1
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 92.7
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.6e-103 379.4 185 95.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.8e-103 378.6 192 92.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.6e-103 378.3 190 92.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 3.6e-103 378.3 184 96.2
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.6e-103 378.3 185 94.6
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.7e-103 377.9 192 92.2
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.7e-103 377.9 192 92.2
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 6.2e-103 377.5 192 91.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.2e-103 377.5 187 94.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.1e-102 376.7 192 92.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 192 91.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 184 95.7
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 184 95.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.4e-102 375.6 190 93.2
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.4e-102 375.6 187 94.1
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.4e-102 375.6 187 94.1
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 4.0e-102 374.8 185 93.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.2e-102 374.4 184 95.1
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 5.2e-102 374.4 192 91.1
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 6.8e-102 374.0 184 94.0
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 6.8e-102 374.0 187 93.0
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 6.8e-102 374.0 184 93.5
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 8.9e-102 373.6 193 90.7
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 91.7
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.2e-101 373.2 188 92.6
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.5e-101 372.9 193 91.2
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.0e-101 372.5 184 92.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 184 94.6
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.6e-101 372.1 184 93.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.6e-101 372.1 184 93.5
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.6e-101 372.1 184 93.5
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.6e-101 372.1 193 91.2
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.6e-101 372.1 192 90.6
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 3.4e-101 371.7 184 92.9
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.4e-101 371.3 190 91.6
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.4e-101 371.3 183 94.5
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 9.9e-101 370.2 184 94.0
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.9e-101 370.2 184 91.8
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-101 370.2 188 92.6
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.9e-101 370.2 185 93.5
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 190 89.5
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.3e-100 369.8 190 89.5
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.3e-100 369.8 190 89.5
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-100 369.8 204 86.8
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.3e-100 369.8 193 90.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.3e-100 369.8 183 94.0
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 91.5
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.7e-100 369.4 184 94.0
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.7e-100 369.4 183 94.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 92.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.2e-100 369.0 190 89.5
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.2e-100 369.0 183 93.4
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.2e-100 369.0 192 91.1
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 2.9e-100 368.6 183 92.9
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.9e-100 368.6 192 90.1
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.9e-100 368.6 184 93.5
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 3.8e-100 368.2 190 89.5
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 3.8e-100 368.2 190 89.5
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 6.4e-100 367.5 187 90.9
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 6.4e-100 367.5 183 92.9
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.4e-100 367.5 192 89.6
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 8.4e-100 367.1 187 91.4
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 8.4e-100 367.1 190 88.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 8.4e-100 367.1 191 88.0
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 8.4e-100 367.1 190 88.9
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.1e-99 366.7 183 93.4
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.1e-99 366.7 192 89.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-99 366.7 184 91.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 183 92.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 183 92.9
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 183 92.9
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.9e-99 365.9 190 88.4
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 190 88.4
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 90.5
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 190 88.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 190 87.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.2e-99 365.2 183 92.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.2e-99 365.2 192 90.1
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 4.1e-99 364.8 184 92.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 7.1e-99 364.0 190 88.4
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 7.1e-99 364.0 190 88.4
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 7.1e-99 364.0 190 88.4
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 7.1e-99 364.0 184 91.3
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 7.1e-99 364.0 187 90.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 7.1e-99 364.0 183 91.3
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 4.6e-98 361.3 192 88.5
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.0e-98 360.9 183 91.8
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 7.8e-98 360.5 201 86.6
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 7.8e-98 360.5 182 92.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.0e-97 360.1 190 87.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.0e-97 360.1 198 84.8
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.7e-97 359.4 258 70.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.6e-97 357.5 190 86.8
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 8.7e-97 357.1 192 88.0
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 190 86.3
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 87.2
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 8.1e-95 350.5 181 89.5
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 4.0e-94 348.2 182 86.8
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.4e-93 344.7 185 84.3
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.7e-92 342.8 182 86.8
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-90 336.3 186 87.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.1e-88 330.1 164 92.7
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.9e-88 329.3 191 80.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 80.3
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 83.5
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-82 309.7 184 81.0
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.5e-80 303.1 152 89.5
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 9.0e-78 293.9 144 94.4
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.6e-74 283.1 140 93.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.3e-73 280.0 140 90.0
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.7e-73 277.3 137 92.0
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.6e-69 264.2 130 91.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.9e-67 259.6 136 87.5
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 3.5e-66 255.4 184 72.8
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.8e-65 253.1 146 82.9
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 5.1e-65 251.5 128 85.9
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.7e-65 251.1 184 69.6
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.9e-64 249.6 162 75.3
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.9e-59 233.0 188 54.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.6e-58 229.9 187 57.8
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.4e-54 216.9 166 68.7
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.4e-49 200.3 157 66.9
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.9e-45 184.9 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-43 180.6 90 88.9
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.1e-42 176.4 90 87.8
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-41 174.1 87 87.4
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.4e-41 173.7 103 76.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 6.7e-41 171.4 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.6e-40 169.5 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.4e-40 168.7 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.4e-40 168.7 87 85.1
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-37 159.5 87 83.9
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 7.7e-37 157.9 102 79.4
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-36 157.5 157 52.9
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.6e-34 150.2 136 59.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.0e-34 147.9 79 82.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.2e-32 144.1 69 85.5
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 4.4e-32 142.1 70 97.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 85.5
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 4.2e-19 99.0 51 92.2
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.8e-15 86.3 44 88.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.0e-14 81.6 55 74.5


User provided reference genes

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