Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 2639.8 1455 100.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1949.1 1591 70.6
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1911.0 1564 69.1
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1887.8 1529 72.3
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1751.9 1270 70.1
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1685.2 1480 64.2
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1673.3 1438 65.4
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1655.2 1349 66.6
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1655.2 1349 66.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1648.6 1365 64.8
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1635.9 1477 60.1
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1619.8 1388 63.8
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1615.1 1381 62.2
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1605.1 1464 59.0
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1600.9 1429 60.7
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1596.6 1389 61.4
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1595.9 1379 62.7
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1595.9 1406 63.3
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1582.8 1461 58.4
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1575.5 1391 61.5
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1575.1 1526 57.9
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1570.8 1359 63.5
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1569.3 1524 60.1
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1567.0 1524 60.3
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1565.4 1524 60.0
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1565.1 1351 64.7
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1564.3 1407 62.3
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1564.3 1354 62.2
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1562.7 1420 58.0
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1560.4 1497 63.3
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1559.7 1268 63.5
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1556.2 1433 58.2
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1552.7 1378 63.1
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1552.7 1418 61.6
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1550.0 1248 63.7
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1549.6 1360 64.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1546.6 1327 65.1
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1541.6 1358 62.2
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1536.5 1476 57.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1535.8 1499 55.6
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1530.8 1524 59.2
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1525.8 1442 60.1
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1525.4 1381 62.1
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1516.9 1359 61.2
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1516.9 1420 57.3
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1516.1 1355 61.5
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1512.7 1400 60.0
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1511.9 1400 60.9
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1503.8 1382 59.7
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1497.6 1331 58.6
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1496.1 1308 59.3
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1486.5 1364 60.3
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1484.5 1399 59.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1472.2 1382 62.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1469.5 1367 56.6
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1465.3 1274 60.8
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1459.5 1370 57.7
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1457.6 1309 61.0
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1453.3 1370 57.6
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1448.3 1056 68.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1445.3 1231 61.4
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1444.1 1032 68.8
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1429.8 1258 59.6
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1421.4 1477 55.2
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1383.2 1396 54.7
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1383.2 1561 52.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1382.1 1403 54.8
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1377.1 1197 63.7
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1375.1 1381 54.8
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1372.8 1301 56.3
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1368.2 1357 55.2
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1365.1 1260 58.2
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1364.4 1375 54.0
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1364.0 1246 58.8
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1361.3 1358 54.6
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1360.5 1359 54.6
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1357.0 1397 53.4
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1356.3 1263 56.1
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1349.3 1411 52.9
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1347.8 1231 63.7
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1332.4 1285 54.3
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1326.2 1274 54.7
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1320.8 1313 54.0
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1294.6 1176 61.9
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1273.1 1047 60.5
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1236.1 1228 61.7
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1208.7 1423 48.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1202.2 857 67.9
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1182.5 1100 59.3
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1176.0 1447 47.4
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1157.5 766 73.8
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1101.7 847 62.7
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1075.8 766 69.1
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 1.0e-306 1057.4 861 63.1
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 1.5e-297 1026.9 1028 52.3
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.1e-292 1008.1 1038 51.1
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.8e-287 993.4 1028 51.3
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 3.4e-262 909.4 854 63.5
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.1e-243 847.0 1077 44.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.2e-227 794.7 973 56.2
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 5.7e-217 759.2 481 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 4.1e-207 726.5 825 47.5
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.8e-198 695.7 641 58.7
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 5.1e-189 666.4 815 46.4
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 6.6e-181 639.4 741 52.4
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 9.6e-180 635.6 741 52.4
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 6.4e-176 622.9 484 65.5
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.1e-151 542.3 499 54.3
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 1.4e-146 525.4 369 70.5
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 5.5e-135 486.9 316 71.8
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.1e-114 419.5 498 58.4
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.5e-108 399.1 297 67.3
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.9e-104 384.8 327 58.7
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.4e-98 365.2 235 74.0
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.7e-88 332.4 206 76.2
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.5e-87 329.3 561 50.4
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 7.5e-84 317.0 545 49.5
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 6.4e-75 287.3 1037 25.2
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.4e-74 286.2 226 64.2
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 1.7e-72 279.3 208 64.4
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 5.2e-69 267.7 728 28.4
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.7e-64 252.7 173 70.5
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 2.1e-54 219.2 755 25.0
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 2.3e-48 199.1 145 63.4
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 6.6e-48 197.6 139 69.1
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 4.0e-45 188.3 152 67.8
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 5.8e-44 184.5 172 59.9
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 5.8e-44 184.5 115 75.7
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.0e-40 173.7 425 41.2
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 3.0e-40 172.2 228 46.1
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 5.1e-40 171.4 139 61.2
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 4.8e-38 164.9 558 29.7
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 6.2e-38 164.5 130 63.1
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 4.0e-37 161.8 104 73.1
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.5e-31 142.5 117 59.8
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 2.8e-30 139.0 154 51.3
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.4e-28 132.1 328 32.0
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.7e-27 129.8 85 72.9
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 2.2e-27 129.4 103 59.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 5.5e-26 124.8 76 67.1
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 6.1e-25 121.3 108 60.2
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 3.9e-24 118.6 80 72.5
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.5e-23 115.9 156 45.5
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 1.4e-21 110.2 374 25.9
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 2.4e-21 109.4 122 51.6
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 5.3e-21 108.2 111 50.5
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 3.4e-20 105.5 75 69.3
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 3.4e-20 105.5 69 73.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 5.9e-20 104.8 76 61.8
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.0e-19 104.0 144 42.4
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.4e-18 100.1 88 54.5
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 1.9e-18 99.8 180 40.0
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 2.5e-18 99.4 103 55.3
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 4.6e-17 95.1 64 67.2
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 6.3e-14 84.7 91 52.7
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.4e-13 82.8 71 57.7
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.1e-13 82.4 54 61.1
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.5e-12 80.1 53 71.7
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 5.9e-12 78.2 68 54.4
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 1.0e-11 77.4 155 37.4
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 8.5e-11 74.3 86 47.7
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 3.6e-09 68.9 64 56.2
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 2.6e-07 62.8 298 20.1
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 3.3e-07 62.4 33 78.8
ECA236G0869 Erigeron canadensis HOM05D002132 ORTHO05D002168 4.4e-07 62.0 360 21.4
Psat5g032480 Pisum sativum HOM05D002132 ORTHO05D002168 7.4e-07 61.2 296 20.6
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 9.7e-07 60.8 48 60.4
Hma1.2p1_1126F.1_g259655 Hydrangea macrophylla HOM05D002132 ORTHO05D002168 1.7e-06 60.1 305 21.3
Hund19433 Selenicereus undatus HOM05D002132 ORTHO05D002168 1.7e-06 60.1 226 24.8
HanXRQChr06g0181111 Helianthus annuus HOM05D002132 ORTHO05D002168 2.2e-06 59.7 360 20.8
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 2.2e-06 59.7 38 65.8
SalBow4G2233 Salvia bowleyana HOM05D002132 ORTHO05D002168 2.8e-06 59.3 351 21.1
Dinv12453 Davidia involucrata HOM05D002132 ORTHO05D002168 3.7e-06 58.9 355 19.2
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 3.7e-06 58.9 47 55.3
Dinv41826 Davidia involucrata HOM05D002132 ORTHO05D002168 6.3e-06 58.2 341 21.4
MBI05_g21324_MAGBIO Magnolia biondii HOM05D002132 ORTHO05D002168 6.3e-06 58.2 302 20.9
Manes.16G083000 Manihot esculenta HOM05D002132 ORTHO05D002168 6.3e-06 58.2 214 22.9
Thecc.09G058500 Theobroma cacao HOM05D002132 ORTHO05D002168 6.3e-06 58.2 289 21.1
Manes.03G050900 Manihot esculenta HOM05D002132 ORTHO05D002168 8.2e-06 57.8 214 24.8


User provided reference genes

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