Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 0.0e+00 1109.7 629 100.0
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 6.0e-179 631.7 626 57.8
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.8e-168 596.3 547 61.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.6e-166 589.7 596 59.9
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 7.8e-163 578.2 583 57.1
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.1e-159 566.2 583 56.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 4.3e-153 545.8 563 54.4
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-149 533.9 561 54.0
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.0e-146 524.6 583 51.3
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.4e-143 514.2 596 54.2
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 9.0e-143 511.5 589 50.3
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.9e-138 496.1 607 48.1
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.3e-136 491.1 584 49.5
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 3.7e-136 489.6 516 52.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 8.2e-136 488.4 584 49.3
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 8.2e-136 488.4 583 49.2
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.1e-135 486.5 620 46.6
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.3e-133 481.1 590 50.5
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.9e-133 479.9 561 50.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 6.5e-133 478.8 565 49.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 6.5e-133 478.8 565 49.4
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.5e-132 476.9 563 49.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.7e-131 473.4 598 49.2
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 6.7e-130 468.8 543 51.4
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 4.3e-129 466.1 537 49.7
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.6e-128 464.2 570 51.6
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 4.8e-128 462.6 608 45.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.8e-127 460.7 575 48.2
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.1e-127 459.9 622 46.3
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 3.1e-127 459.9 557 47.9
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.0e-126 457.2 504 52.4
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 4.5e-126 456.1 609 44.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.3e-125 454.5 603 46.3
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.0e-125 452.6 533 49.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 6.5e-125 452.2 607 45.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.9e-124 450.7 612 45.4
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 4.2e-124 449.5 609 47.8
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 9.3e-124 448.4 653 42.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 2.3e-122 443.7 555 46.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 3.3e-121 439.9 656 46.6
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 7.4e-121 438.7 557 47.4
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.3e-120 438.0 671 44.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.2e-120 437.2 723 42.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.7e-120 436.4 597 46.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 7.7e-118 428.7 654 42.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.0e-117 428.3 724 39.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.7e-117 427.6 623 44.8
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.2e-117 427.2 604 46.7
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.2e-117 427.2 604 45.2
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 2.9e-117 426.8 670 40.7
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.8e-117 426.4 621 45.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 5.0e-117 426.0 635 42.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 5.0e-117 426.0 643 43.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.6e-115 421.0 615 42.9
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 3.6e-115 419.9 654 40.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 4.7e-115 419.5 693 43.3
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 7.9e-115 418.7 735 39.7
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.4e-114 417.9 616 42.7
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.0e-114 416.8 623 42.2
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 5.1e-114 416.0 579 46.1
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.6e-113 413.7 603 41.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 4.4e-113 412.9 616 43.3
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.3e-112 411.4 585 42.9
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.2e-112 410.6 664 45.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.2e-112 410.6 543 45.7
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 2.8e-112 410.2 603 41.8
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.8e-112 410.2 587 42.4
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.1e-111 408.3 571 43.6
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 4.1e-111 406.4 737 39.6
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.4e-110 403.3 573 42.9
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 4.5e-110 402.9 721 40.2
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.0e-109 401.7 598 42.1
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.0e-109 401.7 552 44.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.9e-109 400.2 548 44.0
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.8e-109 399.8 550 44.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 8.5e-109 398.7 574 42.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.7e-107 393.7 565 43.4
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 3.6e-107 393.3 642 41.0
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.6e-107 393.3 582 42.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 8.0e-107 392.1 561 46.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-106 391.3 711 40.4
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.3e-106 390.6 684 42.0
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.2e-106 389.4 573 44.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.1e-105 388.3 731 37.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.3e-104 384.8 736 39.5
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.7e-104 384.4 650 39.5
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 3.7e-104 383.3 668 39.4
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.8e-104 382.9 565 43.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.8e-103 380.9 623 40.4
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.3e-101 374.8 426 55.9
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 6.5e-101 372.5 619 41.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 8.5e-101 372.1 651 36.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 9.4e-100 368.6 533 43.9
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 3.3e-97 360.1 756 38.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.7e-96 357.8 448 48.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 2.4e-95 354.0 861 32.6
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.2e-86 325.1 253 62.5
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.6e-86 324.7 740 36.5
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 2.3e-82 310.8 455 45.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 5.2e-82 309.7 460 44.1
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 2.0e-78 297.7 254 59.1
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.3e-77 294.3 234 63.2
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.0e-70 269.6 194 67.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.6e-69 265.8 514 35.0
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-67 260.0 514 34.6
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.1e-66 257.3 659 33.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 3.2e-63 247.3 236 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.3e-60 237.3 575 33.7
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.6e-60 236.5 513 32.4
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 5.2e-58 229.9 740 28.8
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 7.1e-55 219.5 201 59.7
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.6e-53 213.0 194 58.2
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-52 211.8 199 57.3
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.4e-48 196.1 194 53.6
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 4.2e-39 167.2 172 52.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.1e-38 164.9 139 65.5
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 7.8e-38 162.9 197 44.2
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 6.9e-34 149.8 250 40.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 6.7e-29 133.3 211 38.4
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.6e-25 121.3 235 34.9
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-23 115.5 203 36.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 4.2e-23 114.0 213 36.6
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 4.2e-23 114.0 213 36.6
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-22 111.7 154 42.9
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-18 99.4 329 28.9
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 4.0e-18 97.4 141 41.8
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 9.0e-18 96.3 128 39.8
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.8e-17 93.6 100 54.0
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 7.6e-17 93.2 80 53.8
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 7.1e-15 86.7 156 41.0
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.0e-13 81.3 70 54.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 2.5e-12 78.2 107 40.2
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.4e-10 71.6 126 36.5
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.5e-09 68.9 136 34.6
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.6e-09 68.2 106 37.7
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 4.5e-09 67.4 48 72.9
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.9e-09 67.0 125 36.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.7e-08 65.5 49 69.4
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.7e-08 65.5 75 38.7
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.8e-08 64.3 64 51.6
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.1e-06 58.5 119 33.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.1e-06 58.5 126 34.9
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 2.7e-06 58.2 98 38.8


User provided reference genes

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