Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.8e-100 368.2 192 100.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.8e-73 279.6 196 76.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.1e-70 268.9 196 74.0
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.3e-70 268.1 193 75.1
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.5e-69 266.5 196 73.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.5e-69 266.5 196 73.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.5e-69 266.5 196 73.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.5e-68 261.2 193 75.1
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.9e-67 259.6 206 69.4
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.0e-65 253.8 206 68.9
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 8.7e-65 250.8 200 70.0
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.1e-64 250.4 196 70.4
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 4.3e-64 248.4 199 69.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 4.8e-63 245.0 206 65.0
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 4.8e-63 245.0 200 70.0
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 6.3e-63 244.6 200 69.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 4.1e-62 241.9 192 69.8
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.2e-61 240.4 193 69.4
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 4.5e-61 238.4 198 68.7
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.5e-61 238.4 198 68.7
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.0e-60 237.3 210 65.2
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.3e-60 236.9 212 65.6
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.7e-60 236.5 201 67.7
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.2e-60 236.1 198 68.2
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 2.9e-60 235.7 206 65.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 2.9e-60 235.7 207 66.7
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.8e-60 235.3 200 69.0
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.8e-60 235.3 198 68.2
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 3.8e-60 235.3 193 68.9
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 5.0e-60 235.0 200 67.5
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 5.0e-60 235.0 206 64.6
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.0e-60 235.0 208 65.4
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 6.5e-60 234.6 199 67.8
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 6.5e-60 234.6 207 66.7
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.5e-60 234.2 206 63.6
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.1e-59 233.8 207 66.2
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.4e-59 233.4 200 67.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.4e-59 233.4 207 65.7
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.4e-59 233.4 194 69.6
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.9e-59 233.0 215 62.8
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.9e-59 233.0 202 66.8
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 2.5e-59 232.6 204 67.2
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 2.5e-59 232.6 208 62.5
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 2.5e-59 232.6 200 63.5
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 3.2e-59 232.3 205 64.9
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 4.2e-59 231.9 211 64.5
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 5.5e-59 231.5 192 68.8
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.5e-59 231.5 197 68.0
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 5.5e-59 231.5 192 67.7
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 7.2e-59 231.1 195 69.7
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 9.4e-59 230.7 206 64.1
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.2e-58 230.3 192 68.2
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.7e-58 229.2 209 65.1
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 4.6e-58 228.4 195 67.2
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 4.6e-58 228.4 192 67.2
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 4.6e-58 228.4 192 67.2
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.6e-58 228.4 208 65.9
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 7.9e-58 227.6 200 65.5
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.0e-57 227.3 195 64.1
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.4e-57 226.9 190 66.3
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 65.4
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.8e-57 226.5 198 65.2
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.8e-57 226.5 206 63.1
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-57 225.7 200 65.5
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 3.0e-57 225.7 200 65.5
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 3.0e-57 225.7 200 65.5
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 3.0e-57 225.7 200 65.0
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 3.9e-57 225.3 196 67.3
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 3.9e-57 225.3 212 62.3
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 3.9e-57 225.3 206 63.1
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.7e-57 224.6 206 64.6
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.1e-56 223.8 195 64.6
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.1e-56 223.8 206 64.1
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.1e-56 223.8 200 64.0
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.5e-56 223.4 214 63.1
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.9e-56 223.0 200 64.0
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 1.9e-56 223.0 201 61.2
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.5e-56 222.6 211 64.5
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 2.5e-56 222.6 193 68.4
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.3e-56 221.9 194 63.9
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 5.7e-56 221.5 194 64.9
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 5.7e-56 221.5 206 63.1
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 7.4e-56 221.1 197 68.0
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 7.4e-56 221.1 195 64.1
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 9.7e-56 220.7 197 63.5
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.7e-55 219.9 197 63.5
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 2.8e-55 219.2 195 64.1
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.7e-55 218.8 214 62.1
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 6.3e-55 218.0 196 65.8
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 6.3e-55 218.0 195 65.1
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 8.2e-55 217.6 195 63.1
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 8.2e-55 217.6 196 65.3
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 8.2e-55 217.6 196 65.3
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 8.2e-55 217.6 193 65.3
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.4e-54 216.9 195 64.1
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.4e-54 216.9 198 66.2
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-54 216.9 195 65.1
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-54 216.9 198 66.2
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.4e-54 216.9 193 62.2
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.4e-54 216.9 198 65.2
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.8e-54 216.5 197 61.4
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.4e-54 216.1 200 66.5
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.1e-54 215.7 151 72.8
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.1e-54 215.7 199 64.8
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.1e-54 215.7 135 77.0
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.1e-54 215.7 194 63.4
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.1e-54 215.7 198 63.1
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 3.1e-54 215.7 190 62.1
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 4.1e-54 215.3 194 63.4
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 4.1e-54 215.3 194 63.4
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 5.3e-54 214.9 119 88.2
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 5.3e-54 214.9 193 61.7
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 6.9e-54 214.5 196 63.8
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.6e-53 212.6 193 63.7
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.0e-52 210.7 195 62.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.0e-52 210.7 193 63.7
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.3e-52 210.3 192 63.0
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.7e-52 209.9 204 61.8
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 2.2e-52 209.5 201 61.2
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 2.9e-52 209.1 111 91.0
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 2.9e-52 209.1 192 63.5
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.8e-52 208.8 196 61.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.5e-51 206.1 194 60.8
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 5.5e-51 204.9 197 62.4
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.2e-50 203.8 104 95.2
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.7e-50 201.8 104 94.2
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 4.7e-50 201.8 131 77.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 4.7e-50 201.8 104 94.2
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 4.7e-50 201.8 186 61.3
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.0e-49 200.7 104 93.3
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.8e-49 199.9 168 66.7
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 7.4e-48 194.5 119 81.5
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.7e-47 193.4 104 89.4
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 2.4e-46 189.5 155 66.5
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 2.9e-44 182.6 103 88.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 5.0e-44 181.8 100 86.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 4.2e-43 178.7 206 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.9e-41 172.2 104 79.8
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.3e-40 169.1 102 79.4
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.3e-40 169.1 102 79.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 7.4e-40 167.9 172 56.4
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 4.1e-38 162.2 196 51.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 5.0e-36 155.2 101 73.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.6e-34 150.2 165 50.3
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 4.7e-34 148.7 147 59.2
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 8.2e-31 137.9 102 61.8
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 3.5e-29 132.5 99 62.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-22 110.9 100 51.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 8.6e-20 101.3 100 47.0
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 2.3e-12 76.6 200 32.5
RcHm_v2.0_Chr4g0438311 Rosa chinensis HOM05D001946 ORTHO05D002111 4.0e-09 65.9 118 33.9
TAR628G0060 Trochodendron aralioides HOM05D001946 ORTHO05D002111 6.8e-09 65.1 113 33.6
FvH4_4g30020 Fragaria vesca HOM05D001946 ORTHO05D002111 9.8e-08 61.2 113 32.7
FAN07G0629 Fragaria x ananassa HOM05D001946 ORTHO05D002111 9.8e-08 61.2 113 32.7
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 9.8e-08 61.2 113 32.7
PGR142G3371 Punica granatum HOM05D001946 ORTHO05D002111 1.7e-07 60.5 99 35.4
Phvul.002G051100 Phaseolus vulgaris HOM05D001946 ORTHO05D002111 2.2e-07 60.1 99 35.4
Sed0017760 Sechium edule HOM05D001946 ORTHO05D002111 2.9e-07 59.7 99 35.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 4.9e-07 58.9 102 32.4
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 6.4e-07 58.5 99 35.4
Aqoxy6G01796 Aquilegia oxysepala HOM05D001946 ORTHO05D002111 8.3e-07 58.2 113 29.2
vmacro09891 Vaccinium macrocarpon HOM05D001946 ORTHO05D002111 8.3e-07 58.2 110 32.7
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 1.1e-06 57.8 110 30.9
CANSAT56G0326 Cannabis sativa HOM05D001946 ORTHO05D002111 1.4e-06 57.4 99 34.3
AUR62035062 Chenopodium quinoa HOM05D001946 ORTHO05D002111 1.4e-06 57.4 102 32.4
Thhalv10005136m.g Eutrema salsugineum HOM05D001946 ORTHO05D002111 1.4e-06 57.4 99 33.3
BcaB02g09641 Brassica carinata HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BcaC01g02464 Brassica carinata HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BcaC04g23415 Brassica carinata HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BcaNung01398 Brassica carinata HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
A09p07670 Brassica napus HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
C09p08580 Brassica napus HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BolC3t18704H Brassica oleracea HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BolC9t53767H Brassica oleracea HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
BraA09t36418Z Brassica rapa HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
CBR_g20003 Chara braunii HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 34.3
Sp2g25580 Schrenkiella parvula HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 33.3
PGSC0003DMG400000965 Solanum tuberosum HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 34.3
SGA_v2.0_scaffold99G29449 Striga asiatica HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 34.3
Prupe.2G281000 Prunus persica HOM05D001946 ORTHO05D002111 4.1e-06 55.8 99 33.3
QL09p018999 Quercus lobata HOM05D001946 ORTHO05D002111 5.4e-06 55.5 99 34.3
Gohir.A12G264850 Gossypium hirsutum HOM05D001946 ORTHO05D002111 7.0e-06 55.1 100 35.0
Os10g0170200 Oryza sativa ssp. japonica HOM05D001946 ORTHO05D002111 9.2e-06 54.7 111 29.7


User provided reference genes

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