Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 4.0e-30 134.0 65 100.0
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 3.5e-10 67.8 43 76.7
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 6.1e-10 67.0 43 76.7
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 6.1e-10 67.0 43 76.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.3e-09 65.9 41 75.6
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.8e-09 65.5 43 74.4
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.8e-09 65.5 43 74.4
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.8e-09 65.5 43 74.4
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.3e-09 65.1 43 72.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.3e-09 65.1 43 72.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.3e-09 65.1 43 74.4
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 72.1
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.0e-09 64.7 41 73.2
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.0e-09 64.7 38 76.3
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 74.4
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 74.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 74.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 74.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 3.0e-09 64.7 43 74.4
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.9e-09 64.3 43 72.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.9e-09 64.3 43 72.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 3.9e-09 64.3 43 72.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.9e-09 64.3 41 73.2
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.9e-09 64.3 43 72.1
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 5.1e-09 63.9 43 72.1
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 5.1e-09 63.9 41 73.2
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 5.1e-09 63.9 43 72.1
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.7e-09 63.5 41 73.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 6.7e-09 63.5 43 69.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 6.7e-09 63.5 43 72.1
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 6.7e-09 63.5 43 72.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 8.7e-09 63.2 43 72.1
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 8.7e-09 63.2 43 69.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.1e-08 62.8 41 70.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-08 62.8 41 70.7
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.1e-08 62.8 41 70.7
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.1e-08 62.8 41 70.7
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 72.1
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 72.1
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 72.1
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 72.1
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 67.4
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.1e-08 62.8 43 72.1
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.1e-08 62.8 41 70.7
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.5e-08 62.4 41 73.2
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.5e-08 62.4 41 73.2
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 67.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 72.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 67.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 69.8
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 69.8
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.5e-08 62.4 43 69.8
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.9e-08 62.0 41 70.7
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.9e-08 62.0 41 70.7
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.9e-08 62.0 43 69.8
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.9e-08 62.0 43 69.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-08 62.0 43 72.1
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.9e-08 62.0 43 65.1
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.9e-08 62.0 43 65.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.5e-08 61.6 41 70.7
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-08 61.6 43 69.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.5e-08 61.6 43 69.8
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.5e-08 61.6 43 69.8
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 2.5e-08 61.6 43 67.4
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.5e-08 61.6 43 65.1
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.3e-08 61.2 43 67.4
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 3.3e-08 61.2 43 69.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 4.3e-08 60.8 43 69.8
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.3e-08 60.8 41 68.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 5.7e-08 60.5 43 67.4
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 5.7e-08 60.5 43 67.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.7e-08 60.5 43 69.8
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 5.7e-08 60.5 43 69.8
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 7.4e-08 60.1 43 69.8
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.4e-08 60.1 41 68.3
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.4e-08 60.1 41 68.3
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 7.4e-08 60.1 43 67.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.4e-08 60.1 43 65.1
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 7.4e-08 60.1 43 69.8
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 7.4e-08 60.1 43 69.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 9.7e-08 59.7 43 69.8
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 9.7e-08 59.7 43 65.1
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.7e-08 59.7 40 72.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 9.7e-08 59.7 43 69.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 9.7e-08 59.7 41 68.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.3e-07 59.3 43 65.1
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.3e-07 59.3 43 67.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.3e-07 59.3 43 69.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.6e-07 58.9 41 65.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 3.7e-07 57.8 43 62.8
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 6.3e-07 57.0 43 60.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 6.3e-07 57.0 41 65.9
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.1e-06 56.2 43 60.5
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.4e-06 55.8 44 68.2
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.8e-06 55.5 43 62.8
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.4e-06 55.1 43 58.1
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.4e-06 55.1 38 63.2
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.1e-06 54.7 41 63.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 3.1e-06 54.7 43 60.5
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.1e-06 54.7 41 63.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 6.9e-06 53.5 43 55.8


User provided reference genes

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