Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1950.6 1007 100.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1270.4 1043 67.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1208.0 1023 65.4
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1104.4 1032 60.6
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1083.6 1027 60.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 1.7e-308 1062.8 1018 60.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 9.2e-307 1057.0 1025 59.4
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 3.3e-304 1048.5 1030 59.4
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 1.2e-303 1046.6 1008 60.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.1e-302 1043.5 1025 58.8
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 4.4e-301 1038.1 1030 59.2
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 9.8e-301 1036.9 1028 59.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.7e-300 1036.2 1022 59.3
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.4e-299 1033.1 1031 57.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 3.2e-299 1031.9 1019 58.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.4e-299 1031.2 1025 58.4
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 2.1e-298 1029.2 1029 59.5
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 4.6e-298 1028.1 1023 58.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 6.0e-298 1027.7 1026 58.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 1.3e-297 1026.5 1020 58.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 6.6e-297 1024.2 1026 57.4
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 2.5e-296 1022.3 1013 58.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 9.5e-296 1020.4 1023 58.4
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.1e-295 1019.2 1022 58.0
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 2.8e-295 1018.8 1023 57.8
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 3.6e-295 1018.5 1025 58.5
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 1.1e-294 1016.9 1020 58.2
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 1.1e-294 1016.9 1018 59.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 1.1e-294 1016.9 1022 56.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 3.1e-294 1015.4 1029 57.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.0e-294 1015.0 948 61.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 7.6e-293 1010.7 1021 57.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 7.6e-293 1010.7 1009 57.7
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 8.4e-292 1007.3 1023 57.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 1.1e-291 1006.9 970 58.6
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.1e-291 1006.9 1028 57.3
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 7.1e-291 1004.2 1023 57.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.7e-290 1002.3 1022 57.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 6.0e-290 1001.1 1021 57.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.3e-289 1000.0 1017 56.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 1.7e-289 999.6 1021 57.6
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.7e-289 999.6 1021 57.0
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 3.9e-289 998.4 1020 58.0
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 8.6e-289 997.3 1024 56.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 2.8e-287 992.3 1025 57.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.2e-284 982.6 1032 56.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 8.4e-284 980.7 964 57.8
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.1e-283 980.3 1030 58.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 4.2e-283 978.4 1017 57.1
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 5.4e-283 978.0 1024 56.7
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 9.3e-283 977.2 964 57.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.1e-282 976.1 1022 56.7
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 6.0e-282 974.5 1019 57.5
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 6.0e-282 974.5 1022 56.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 7.8e-282 974.2 1022 55.4
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.3e-281 972.6 957 56.4
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.1e-279 964.1 1040 55.6
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.4e-277 958.7 1027 55.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 4.9e-276 954.9 980 58.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.1e-275 953.7 1026 55.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 4.6e-274 948.3 1020 55.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 7.9e-274 947.6 1082 53.3
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 5.1e-273 944.9 1033 54.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-272 943.7 1024 53.2
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.3e-272 942.2 1027 55.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.3e-272 941.8 1024 55.4
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 7.4e-272 941.0 1042 54.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 3.7e-271 938.7 1025 55.5
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.4e-270 936.8 1028 54.2
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.8e-270 936.4 986 56.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-269 933.3 1022 52.7
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-268 929.9 1022 54.4
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-266 923.7 1027 54.1
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.6e-266 923.3 1029 53.5
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 7.9e-266 921.0 1033 53.3
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 5.1e-265 918.3 1026 53.8
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 6.7e-265 917.9 1188 49.3
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.3e-263 913.7 1027 53.7
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 6.2e-263 911.4 962 55.5
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 5.3e-262 908.3 1036 52.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 4.9e-260 901.7 983 54.6
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 3.2e-259 899.0 1024 52.7
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 7.1e-259 897.9 987 54.5
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.5e-258 895.6 965 56.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.3e-257 892.9 965 54.0
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.5e-256 890.2 949 55.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.8e-255 885.9 995 52.7
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 1.1e-254 884.0 1022 52.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 9.0e-254 880.9 981 53.6
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.0e-252 877.5 983 53.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-251 874.0 982 53.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.6e-250 870.2 971 54.0
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 5.9e-245 851.7 973 52.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 6.7e-241 838.2 987 50.9
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-238 829.7 809 58.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 6.9e-238 828.2 808 57.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 5.9e-237 825.1 928 55.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 5.9e-237 825.1 977 50.4
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 5.0e-236 822.0 1020 50.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 9.1e-222 774.6 1114 47.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.3e-220 770.8 816 54.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.8e-215 752.3 976 48.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 7.3e-195 685.3 819 52.7
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.6e-194 684.1 908 49.0
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 6.8e-185 652.1 809 49.4
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 7.8e-181 638.6 559 63.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 5.6e-179 632.5 1022 43.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.3e-175 621.3 918 46.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.5e-165 586.6 1011 38.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-163 580.9 1006 37.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 9.0e-161 572.0 653 52.1
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.6e-160 570.5 1005 38.4
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.9e-158 564.3 1001 37.8
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.8e-156 557.8 972 38.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 7.2e-134 482.6 951 33.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 8.8e-132 475.7 444 62.6
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.5e-131 474.2 442 62.4
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.0e-111 409.1 510 47.5
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 3.8e-111 407.1 450 51.6
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.4e-108 398.7 422 57.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.4e-100 372.1 382 54.7
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.4e-100 372.1 639 41.8
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.0e-95 355.9 381 54.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.0e-95 353.6 362 55.5
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.1e-93 348.2 776 33.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.4e-91 340.5 387 53.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-80 305.8 379 49.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.9e-70 271.9 343 48.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.2e-66 258.5 228 63.2
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-63 248.8 503 35.0
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.4e-49 202.6 541 32.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 7.1e-49 200.3 138 73.2
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.2e-40 172.9 922 22.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.0e-39 169.9 147 68.7
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.9e-36 157.1 139 68.3
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.2e-33 148.3 91 78.0
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.9e-32 143.7 140 62.9
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.9e-32 143.7 140 62.9
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 8.7e-31 140.2 767 21.5
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 8.7e-31 140.2 130 60.0
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-30 139.4 92 66.3
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 2.5e-30 138.7 102 61.8
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 4.8e-29 134.4 134 62.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.0e-28 131.3 183 47.0
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.5e-27 127.9 156 53.2
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-24 119.8 169 45.6
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.1e-23 114.4 88 75.0
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.8e-21 108.6 113 59.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.2e-19 103.2 68 67.6
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.6e-19 102.1 87 69.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.7e-18 99.4 281 24.6
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 3.8e-18 98.2 78 61.5
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 7.2e-17 94.0 95 51.6
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.7e-16 92.0 49 83.7
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 3.0e-15 88.6 87 60.9
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.1e-15 87.8 47 76.6
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-13 82.8 61 63.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.4e-12 79.7 65 61.5
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.8e-12 79.3 105 43.8
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.2e-09 68.6 48 72.9
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.2e-09 68.2 45 68.9
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 7.9e-08 63.9 48 62.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.9e-07 61.6 59 55.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.4e-06 58.2 45 62.2


User provided reference genes

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