Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 6.8e-121 437.6 261 100.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.3e-39 166.8 199 52.8
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.0e-36 156.0 199 50.8
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 6.8e-28 128.6 202 47.0
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.2e-27 127.9 205 44.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.6e-27 126.7 179 48.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-26 124.4 201 45.3
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.2e-26 123.6 200 46.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-25 121.3 223 42.2
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.4e-25 120.9 201 45.3
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.9e-25 120.6 178 50.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.4e-25 120.2 224 43.8
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 4.1e-25 119.4 189 46.0
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.5e-24 116.3 201 40.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.6e-24 115.9 200 45.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.0e-24 115.5 208 41.8
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.8e-24 115.2 200 44.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-23 114.4 200 45.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.7e-23 114.0 199 44.2
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-23 114.0 187 44.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.9e-23 112.8 215 38.1
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.6e-23 112.1 200 44.0
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.5e-22 110.9 211 43.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.9e-22 110.5 201 43.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.3e-22 108.6 202 43.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 7.3e-22 108.6 188 41.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.2e-21 107.8 200 41.5
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.8e-21 106.7 190 43.2
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.8e-21 106.7 183 43.2
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.8e-21 106.7 201 40.8
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.6e-21 106.3 202 43.1
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 4.7e-21 105.9 188 44.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 6.2e-21 105.5 202 43.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.1e-20 104.8 200 43.5
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.1e-20 104.8 188 43.1
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.4e-20 104.4 198 43.4
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.4e-20 104.4 210 42.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.8e-20 104.0 178 42.7
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.1e-20 103.2 201 41.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 8.9e-20 101.7 144 49.3
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.2e-19 101.3 197 42.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.2e-19 101.3 204 42.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.0e-19 100.5 188 39.9
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 4.4e-19 99.4 197 41.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.4e-19 99.4 197 43.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.8e-19 99.0 184 41.8
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.8e-19 98.2 184 41.3
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.3e-18 97.8 200 37.5
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.3e-18 97.8 190 41.1
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.2e-18 97.1 165 43.0
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.2e-18 97.1 187 41.2
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.9e-18 95.9 180 40.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.9e-18 95.9 198 37.9
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.9e-18 95.9 186 43.0
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 6.4e-18 95.5 198 37.9
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 8.3e-18 95.1 178 43.8
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.1e-17 94.7 224 39.3
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.1e-17 94.7 178 41.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.1e-17 94.7 198 37.4
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.4e-17 94.4 201 39.3
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.4e-17 94.4 199 41.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.9e-17 94.0 178 42.7
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.2e-17 93.2 178 43.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.1e-17 92.0 187 40.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 7.1e-17 92.0 185 41.6
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 9.2e-17 91.7 198 37.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 9.2e-17 91.7 189 40.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.7e-16 90.1 178 41.6
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.5e-16 89.7 173 39.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 4.6e-16 89.4 178 42.7
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 4.6e-16 89.4 185 38.9
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 7.8e-16 88.6 189 40.7
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.0e-15 88.2 179 42.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.3e-15 87.8 200 39.0
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-15 87.8 207 39.6
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.3e-15 87.8 178 40.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.7e-15 87.4 200 40.5
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.0e-15 86.7 200 35.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.9e-15 86.3 179 41.9
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.1e-14 84.7 206 39.8
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.1e-14 84.7 177 39.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.5e-14 84.3 174 39.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.5e-14 83.6 193 40.9
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.5e-14 83.6 177 41.2
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.6e-14 82.4 189 38.6
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 5.6e-14 82.4 199 36.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.3e-14 82.0 175 38.3
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.3e-14 82.0 200 37.0
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.6e-13 80.9 187 38.5
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.7e-13 79.3 136 43.4
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 4.7e-13 79.3 126 43.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.7e-13 79.3 201 35.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 8.1e-13 78.6 143 44.8
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 4.0e-12 76.3 178 41.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.8e-12 75.5 220 36.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 8.9e-12 75.1 223 34.1
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-11 74.3 194 31.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 4.4e-11 72.8 192 34.4
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 5.8e-11 72.4 155 41.9
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.9e-11 71.6 218 33.9
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 9.9e-11 71.6 211 37.9
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 4.9e-10 69.3 158 39.9
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 4.9e-10 69.3 158 39.9
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.9e-10 69.3 200 34.5
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 6.4e-10 68.9 142 42.3
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 8.4e-10 68.6 183 38.3
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 8.4e-10 68.6 160 38.1
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-09 68.2 137 36.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.1e-09 68.2 214 36.0
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 3.2e-09 66.6 173 40.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 3.2e-09 66.6 187 33.7
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 5.4e-09 65.9 152 39.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.4e-09 65.9 222 33.8
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.7e-08 63.5 216 35.2
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.7e-08 63.5 216 35.2
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.7e-08 63.5 216 35.2
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.5e-08 63.2 173 33.5
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.8e-08 62.0 222 36.5
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 7.8e-08 62.0 220 36.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.7e-07 60.8 156 41.7
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-07 60.8 156 41.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.9e-07 59.7 168 36.3
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 5.1e-07 59.3 181 30.9
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.5e-06 57.8 119 41.2
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.3e-06 55.5 204 33.3


User provided reference genes

Program Settings