Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.5e-79 297.4 154 100.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.3e-36 156.0 122 70.5
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 7.6e-35 151.0 102 76.5
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.3e-34 150.2 104 76.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.9e-34 149.1 102 77.5
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.9e-34 148.3 102 75.5
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.1e-33 147.1 96 79.2
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 5.4e-33 144.8 96 78.1
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.4e-33 144.8 103 72.8
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 5.4e-33 144.8 98 76.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 9.2e-33 144.1 105 73.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 9.2e-33 144.1 105 73.3
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 9.2e-33 144.1 104 72.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 9.2e-33 144.1 97 75.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.2e-32 143.7 102 73.5
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.2e-32 143.7 98 73.5
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.2e-32 143.7 93 78.5
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.6e-32 143.3 104 71.2
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.6e-32 143.3 96 77.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.7e-32 142.5 101 73.3
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.6e-32 141.7 103 72.8
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.0e-32 141.4 95 73.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 6.0e-32 141.4 100 72.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.0e-31 140.6 98 72.4
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.0e-31 140.6 97 74.2
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.3e-31 140.2 88 79.5
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.3e-31 140.2 104 70.2
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.3e-31 140.2 93 75.3
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.3e-31 140.2 104 70.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.3e-31 140.2 97 73.2
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.7e-31 139.8 102 71.6
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.0e-31 139.0 115 65.2
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.0e-31 139.0 96 72.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.9e-31 138.7 112 67.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 6.6e-31 137.9 104 69.2
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 6.6e-31 137.9 97 72.2
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.6e-31 137.5 115 66.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.1e-30 137.1 93 74.2
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.1e-30 137.1 93 72.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.1e-30 137.1 93 74.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.5e-30 136.7 93 73.1
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.5e-30 136.7 99 70.7
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.9e-30 136.3 98 69.4
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.9e-30 136.3 102 67.6
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.5e-30 136.0 102 69.6
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 2.5e-30 136.0 93 73.1
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.3e-30 135.6 95 73.7
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.3e-30 135.6 96 72.9
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.3e-30 135.6 118 61.9
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 4.3e-30 135.2 100 68.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 5.6e-30 134.8 97 70.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 5.6e-30 134.8 102 69.6
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 5.6e-30 134.8 104 68.3
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.3e-30 134.4 93 71.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.3e-30 134.4 102 65.7
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 9.6e-30 134.0 118 62.7
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 9.6e-30 134.0 104 70.2
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 9.6e-30 134.0 95 69.5
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.2e-29 133.7 97 68.0
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.6e-29 133.3 102 64.7
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.6e-29 133.3 111 64.9
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.1e-29 132.9 93 69.9
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.1e-29 132.9 118 61.9
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.1e-29 132.9 102 68.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.1e-29 132.9 98 69.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-29 132.5 93 69.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.7e-29 131.7 96 68.8
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 6.2e-29 131.3 98 70.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 8.1e-29 131.0 99 66.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.1e-28 130.6 97 69.1
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-28 130.2 100 65.0
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.8e-28 129.8 99 65.7
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.8e-28 129.8 103 67.0
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.1e-28 129.0 105 67.6
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 5.2e-28 128.3 96 65.6
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 5.2e-28 128.3 96 65.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 5.2e-28 128.3 96 65.6
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 5.2e-28 128.3 96 65.6
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 5.2e-28 128.3 96 65.6
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 5.2e-28 128.3 100 67.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.8e-28 127.9 94 69.1
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 6.8e-28 127.9 118 59.3
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 8.9e-28 127.5 98 66.3
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 8.9e-28 127.5 104 62.5
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 8.9e-28 127.5 93 67.7
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.5e-27 126.7 96 64.6
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.0e-27 126.3 94 68.1
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 2.6e-27 125.9 88 67.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.6e-27 125.9 88 67.0
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.6e-27 125.9 88 67.0
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.4e-27 125.2 87 71.3
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.8e-27 124.8 111 57.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.3e-26 123.6 88 68.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.7e-26 123.2 96 64.6
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.7e-26 123.2 91 65.9
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-26 122.5 96 64.6
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.9e-26 122.5 96 64.6
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 3.8e-26 122.1 96 63.5
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.4e-26 121.3 88 65.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 8.4e-26 120.9 99 63.6
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.6e-24 116.7 91 68.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.1e-24 116.3 139 51.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 9.0e-20 100.9 97 58.8
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-17 93.6 95 52.6
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.4e-17 93.6 84 60.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.4e-17 91.7 61 72.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-14 84.0 95 45.3
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.9e-14 83.2 82 51.2
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.3e-14 82.4 97 52.6
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.3e-14 82.4 50 80.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 8.1e-13 77.8 89 48.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.2e-10 69.7 69 59.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.7e-08 62.8 45 66.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.3e-07 60.5 63 54.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-07 60.5 43 67.4
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.8e-07 60.1 42 66.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-06 56.6 44 54.5
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 5.6e-06 55.1 45 57.8


User provided reference genes

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