Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.2e-230 802.7 375 100.0
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.4e-207 726.1 372 89.0
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 7.6e-198 693.7 373 83.1
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.7e-197 692.6 372 83.9
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.9e-197 691.8 372 83.9
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.9e-197 691.8 373 82.8
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.4e-196 689.5 382 81.9
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 7.1e-196 687.2 375 84.0
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 7.1e-196 687.2 374 82.9
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.1e-195 685.6 373 81.8
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.5e-195 684.9 372 82.5
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 3.5e-195 684.9 374 82.6
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.6e-195 684.5 375 82.7
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 6.0e-195 684.1 372 80.4
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 7.9e-195 683.7 374 81.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 6.7e-194 680.6 372 82.3
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 8.7e-194 680.2 375 81.9
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.5e-193 679.5 372 82.8
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 5.6e-193 677.6 375 81.9
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 7.4e-193 677.2 374 81.6
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.8e-192 675.2 375 80.8
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.8e-192 674.5 372 80.6
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 4.8e-192 674.5 372 80.9
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.2e-192 673.7 373 79.4
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-191 673.3 371 81.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 3.1e-191 671.8 374 81.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 9.0e-191 670.2 375 80.3
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.5e-190 669.5 367 80.4
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.6e-190 668.7 383 78.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 5.8e-190 667.5 372 79.6
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.7e-189 666.0 373 79.6
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.7e-189 666.0 390 76.7
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.9e-189 665.2 372 80.4
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 4.9e-189 664.5 372 79.3
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 4.9e-189 664.5 372 81.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.5e-188 661.0 374 79.1
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 7.1e-188 660.6 374 78.6
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.6e-187 657.9 372 79.6
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 6.0e-187 657.5 369 79.4
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.0e-186 656.8 374 79.9
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.8e-186 656.0 371 80.1
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.0e-186 655.2 375 78.7
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 6.7e-186 654.1 374 77.8
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 6.7e-186 654.1 374 78.3
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 6.7e-186 654.1 372 76.6
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 8.7e-186 653.7 370 77.8
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 8.7e-186 653.7 374 77.8
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.5e-185 652.1 374 78.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.3e-185 651.7 374 78.9
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 5.7e-185 651.0 373 76.4
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 9.7e-185 650.2 374 77.5
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.3e-184 649.8 373 77.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.2e-184 649.0 372 77.7
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 4.8e-184 647.9 374 76.5
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 8.2e-184 647.1 373 77.2
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 77.7
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-183 646.4 372 77.2
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.4e-183 646.4 372 77.4
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.8e-183 646.0 367 77.1
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.3e-183 644.4 372 76.3
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.2e-182 643.3 374 77.3
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.2e-182 643.3 372 74.5
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.0e-182 642.5 373 77.5
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.0e-181 640.2 372 75.8
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.3e-181 639.8 374 74.9
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 2.2e-181 639.0 369 75.6
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 3.8e-181 638.3 371 77.6
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 8.5e-181 637.1 380 75.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 8.5e-181 637.1 373 76.1
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.1e-180 636.7 374 76.2
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.5e-180 634.4 374 78.6
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 3.6e-179 631.7 373 75.1
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.6e-179 631.3 374 75.1
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.4e-178 629.8 373 74.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 1.8e-178 629.4 370 75.9
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.3e-178 629.0 375 73.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.0e-178 628.6 374 74.6
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.0e-178 628.6 373 74.8
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.7e-176 622.9 373 76.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 6.3e-176 620.9 374 74.1
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.1e-175 620.2 371 73.9
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.4e-175 619.8 373 73.5
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-175 619.4 371 73.0
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-175 619.4 374 73.8
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 9.1e-175 617.1 372 73.4
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 9.1e-175 617.1 372 73.4
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.2e-174 616.7 357 76.2
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.5e-174 616.3 373 73.7
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 2.6e-174 615.5 423 68.6
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 7.7e-174 614.0 371 72.2
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.0e-173 613.6 373 73.2
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-173 613.6 372 73.4
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.0e-173 613.6 372 72.6
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 2.9e-173 612.1 455 63.7
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-172 610.1 373 72.7
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.2e-172 608.2 348 78.7
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 4.2e-172 608.2 386 72.5
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.2e-171 606.7 375 74.7
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 3.6e-171 605.1 400 68.8
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.8e-170 602.8 374 72.2
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 3.0e-170 602.1 403 69.5
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 6.7e-170 600.9 374 70.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.3e-169 598.6 346 77.2
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.4e-167 592.4 410 68.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 2.6e-166 589.0 373 70.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 3.8e-165 585.1 374 70.9
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.0e-165 584.7 375 69.3
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.1e-159 567.0 373 67.3
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.9e-156 556.2 372 68.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.2e-156 555.4 361 68.4
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 6.1e-155 551.2 308 82.1
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.0e-154 548.5 370 65.9
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.5e-153 546.6 375 65.3
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 3.7e-152 542.0 367 66.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.8e-151 539.7 369 64.5
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 5.3e-151 538.1 369 65.0
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 4.1e-143 511.9 415 59.3
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.9e-140 503.1 294 73.5
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.9e-138 494.2 372 62.9
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 3.1e-135 485.7 386 59.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 8.0e-131 471.1 277 76.9
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.4e-114 417.2 385 51.9
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.8e-114 416.8 343 60.9
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.2e-107 391.7 250 72.8
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.4e-103 379.8 217 77.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-102 377.5 229 74.2
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.8e-98 363.6 372 51.1
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-98 363.2 221 75.1
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 6.4e-96 355.1 387 46.8
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 7.3e-92 341.7 384 46.1
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.0e-89 333.6 403 43.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.4e-88 328.6 204 73.5
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.8e-81 305.4 165 79.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.3e-77 294.3 167 79.0
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.6e-67 260.8 171 71.3
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.2e-46 191.4 476 29.2
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 7.4e-44 182.2 94 85.1
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.0e-38 162.2 129 67.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 7.7e-33 145.6 77 85.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-32 145.2 116 56.0
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-32 144.8 102 62.7
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.9e-32 143.7 92 73.9
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 3.8e-24 116.7 340 27.4
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.4e-18 98.2 163 35.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.9e-15 87.8 45 86.7
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.2e-14 85.1 43 88.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.8e-14 84.0 47 74.5
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.0e-13 82.0 46 71.7
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 5.2e-13 79.7 40 87.5
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 6.6e-08 62.8 30 76.7
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 9.5e-07 58.9 29 89.7
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 2.1e-06 57.8 26 80.8


User provided reference genes

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