Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0739F.1_g211290 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 1.5e-95 352.8 176 100.0
Hma1.2p1_0739F.1_g211300 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 2.0e-95 352.4 175 100.0
Lj4A136T80 Lonicera japonica HOM05D005776 ORTHO05D007333 3.6e-49 198.7 183 62.8
Eucgr.H01941 Eucalyptus grandis HOM05D005776 ORTHO05D007333 1.4e-48 196.8 177 59.9
FAN28G0587 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.2e-48 194.9 178 61.8
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 7.5e-47 191.0 176 59.7
FvH4_1g14520 Fragaria vesca HOM05D005776 ORTHO05D007333 7.5e-47 191.0 178 61.2
FAN19G1930 Fragaria x ananassa HOM05D005776 ORTHO05D007333 1.7e-46 189.9 178 60.7
GSVIVG01003777001 Vitis vinifera HOM05D005776 ORTHO05D007333 1.7e-46 189.9 176 59.7
FAN26G3400 Fragaria x ananassa HOM05D005776 ORTHO05D007333 2.2e-46 189.5 177 60.5
Haze_15167 Corylus avellana HOM05D005776 ORTHO05D007333 2.9e-46 189.1 176 60.2
Actinidia12087 Actinidia chinensis HOM05D005776 ORTHO05D007333 1.4e-45 186.8 176 59.1
Manes.12G094700 Manihot esculenta HOM05D005776 ORTHO05D007333 1.9e-45 186.4 182 56.6
HanXRQChr12g0378471 Helianthus annuus HOM05D005776 ORTHO05D007333 2.4e-45 186.0 175 58.3
Rhsim10G0126200 Rhododendron simsii HOM05D005776 ORTHO05D007333 2.4e-45 186.0 164 63.4
FAN23G2656 Fragaria x ananassa HOM05D005776 ORTHO05D007333 3.2e-45 185.7 178 60.1
Lsat_1_v5_gn_3_94020 Lactuca sativa HOM05D005776 ORTHO05D007333 5.4e-45 184.9 175 56.0
Cfa004232 Carpinus fangiana HOM05D005776 ORTHO05D007333 7.0e-45 184.5 176 59.7
CiPaw.01G029000 Carya illinoinensis HOM05D005776 ORTHO05D007333 2.0e-44 183.0 175 60.6
COL.COLO4_07276 Corchorus olitorius HOM05D005776 ORTHO05D007333 2.7e-44 182.6 176 57.4
ECA246G4011 Erigeron canadensis HOM05D005776 ORTHO05D007333 3.5e-44 182.2 179 57.0
COL.COLO4_13087 Corchorus olitorius HOM05D005776 ORTHO05D007333 4.6e-44 181.8 176 58.0
Aqoxy6G00958 Aquilegia oxysepala HOM05D005776 ORTHO05D007333 6.0e-44 181.4 180 57.8
Duzib251G0151 Durio zibethinus HOM05D005776 ORTHO05D007333 6.0e-44 181.4 176 56.8
RcHm_v2.0_Chr2g0103261 Rosa chinensis HOM05D005776 ORTHO05D007333 6.0e-44 181.4 180 57.2
Thecc.02G289200 Theobroma cacao HOM05D005776 ORTHO05D007333 6.0e-44 181.4 176 59.1
Potri.007G034400 Populus trichocarpa HOM05D005776 ORTHO05D007333 1.0e-43 180.6 175 56.6
MD15G1273400 Malus domestica HOM05D005776 ORTHO05D007333 1.3e-43 180.3 178 56.7
MD02G1158600 Malus domestica HOM05D005776 ORTHO05D007333 1.7e-43 179.9 179 57.5
MSTRG.3404 Avicennia marina HOM05D005776 ORTHO05D007333 2.3e-43 179.5 179 58.7
Gohir.D02G141600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 3.9e-43 178.7 175 57.7
Gorai.005G159700 Gossypium raimondii HOM05D005776 ORTHO05D007333 3.9e-43 178.7 175 57.7
CAN.G337.59 Capsicum annuum HOM05D005776 ORTHO05D007333 5.0e-43 178.3 176 54.0
CANSAT25G0990 Cannabis sativa HOM05D005776 ORTHO05D007333 8.6e-43 177.6 177 55.4
Sabra07G0030000 Salix brachista HOM05D005776 ORTHO05D007333 8.6e-43 177.6 175 57.1
Prupe.7G145200 Prunus persica HOM05D005776 ORTHO05D007333 1.5e-42 176.8 177 57.6
Gohir.A03G118800 Gossypium hirsutum HOM05D005776 ORTHO05D007333 7.3e-42 174.5 175 56.0
MBI16_g29183_MAGBIO Magnolia biondii HOM05D005776 ORTHO05D007333 9.5e-42 174.1 178 56.7
Nitab4.5_0000984g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 1.2e-41 173.7 176 54.5
Peaxi162Scf00235g00723 Petunia axillaris HOM05D005776 ORTHO05D007333 1.6e-41 173.3 178 53.9
Nitab4.5_0002826g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 2.1e-41 172.9 176 53.4
TWI09G1011 Tripterygium wilfordii HOM05D005776 ORTHO05D007333 6.2e-41 171.4 177 57.1
Sopen07g033140 Solanum pennellii HOM05D005776 ORTHO05D007333 8.1e-41 171.0 178 53.4
PGSC0003DMG400022206 Solanum tuberosum HOM05D005776 ORTHO05D007333 8.1e-41 171.0 178 53.4
PGR102G0103 Punica granatum HOM05D005776 ORTHO05D007333 1.4e-40 170.2 178 53.9
Cc07_g19620 Coffea canephora HOM05D005776 ORTHO05D007333 3.1e-40 169.1 173 54.3
CSS0016523 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 5.2e-40 168.3 109 79.8
CSS0036517 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 5.2e-40 168.3 109 79.8
AUR62022050 Chenopodium quinoa HOM05D005776 ORTHO05D007333 5.2e-40 168.3 172 55.2
Solyc07g064940.3 Solanum lycopersicum HOM05D005776 ORTHO05D007333 5.2e-40 168.3 178 52.2
Lj2g0005971 Lotus japonicus HOM05D005776 ORTHO05D007333 8.9e-40 167.5 181 53.6
AUR62009176 Chenopodium quinoa HOM05D005776 ORTHO05D007333 1.5e-39 166.8 172 54.7
Sp7g34590 Schrenkiella parvula HOM05D005776 ORTHO05D007333 1.5e-39 166.8 160 52.5
Migut.K00840 Erythranthe guttata HOM05D005776 ORTHO05D007333 2.0e-39 166.4 168 56.0
Ciclev10026303m.g Citrus clementina HOM05D005776 ORTHO05D007333 3.4e-39 165.6 176 52.3
Phvul.002G023500 Phaseolus vulgaris HOM05D005776 ORTHO05D007333 5.8e-39 164.9 169 55.0
VMungo1215G2372 Vigna mungo HOM05D005776 ORTHO05D007333 7.5e-39 164.5 176 54.5
Thhalv10026051m.g Eutrema salsugineum HOM05D005776 ORTHO05D007333 2.2e-38 162.9 167 53.3
CsaV3_6G042720 Cucumis sativus L. HOM05D005776 ORTHO05D007333 3.7e-38 162.2 175 51.4
Psat2g163800 Pisum sativum HOM05D005776 ORTHO05D007333 3.7e-38 162.2 175 53.1
ClCG01G016400 Citrullus lanatus HOM05D005776 ORTHO05D007333 4.9e-38 161.8 175 50.9
Oeu032924.1 Olea europaea HOM05D005776 ORTHO05D007333 4.9e-38 161.8 93 82.8
TPR.G29855 Trifolium pratense HOM05D005776 ORTHO05D007333 6.4e-38 161.4 177 50.3
Carub.0007s0339 Capsella rubella HOM05D005776 ORTHO05D007333 8.3e-38 161.0 156 53.2
Glyma.01G182500 Glycine max HOM05D005776 ORTHO05D007333 8.3e-38 161.0 177 54.8
Medtr5g018580 Medicago truncatula HOM05D005776 ORTHO05D007333 8.3e-38 161.0 176 50.0
Sed0000268 Sechium edule HOM05D005776 ORTHO05D007333 8.3e-38 161.0 149 56.4
Hund05302 Selenicereus undatus HOM05D005776 ORTHO05D007333 8.3e-38 161.0 174 52.3
BcaNung03515 Brassica carinata HOM05D005776 ORTHO05D007333 1.1e-37 160.6 154 57.1
QL06p044240 Quercus lobata HOM05D005776 ORTHO05D007333 1.1e-37 160.6 187 51.9
Cpa.g.sc15.62 Carica papaya HOM05D005776 ORTHO05D007333 1.9e-37 159.8 175 53.7
vmacro11025 Vaccinium macrocarpon HOM05D005776 ORTHO05D007333 1.9e-37 159.8 149 60.4
AL7G14000 Arabidopsis lyrata HOM05D005776 ORTHO05D007333 7.1e-37 157.9 162 50.6
C01p02180 Brassica napus HOM05D005776 ORTHO05D007333 7.1e-37 157.9 156 52.6
BolC1t00210H Brassica oleracea HOM05D005776 ORTHO05D007333 7.1e-37 157.9 156 52.6
A01p02000 Brassica napus HOM05D005776 ORTHO05D007333 9.2e-37 157.5 156 54.5
BraA01t00188Z Brassica rapa HOM05D005776 ORTHO05D007333 9.2e-37 157.5 156 54.5
CARHR245300 Cardamine hirsuta HOM05D005776 ORTHO05D007333 2.7e-36 156.0 150 54.0
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 3.5e-36 155.6 181 49.7
MELO3C007510.2 Cucumis melo HOM05D005776 ORTHO05D007333 4.6e-36 155.2 181 50.3
SalBow1G0426 Salvia bowleyana HOM05D005776 ORTHO05D007333 4.6e-36 155.2 134 59.7
SalBow1G6751 Salvia bowleyana HOM05D005776 ORTHO05D007333 4.6e-36 155.2 134 59.7
PSO675G1056 Papaver somniferum HOM05D005776 ORTHO05D007333 6.0e-36 154.8 181 49.7
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 1.0e-35 154.1 146 54.1
arahy.Tifrunner.gnm1.ann1.41BUH4 Arachis hypogaea HOM05D005776 ORTHO05D007333 2.3e-35 152.9 164 54.9
Ca_24808_v3 Cicer arietinum L. HOM05D005776 ORTHO05D007333 2.3e-35 152.9 177 49.7
SGA_v2.0_scaffold10G05128 Striga asiatica HOM05D005776 ORTHO05D007333 3.0e-35 152.5 141 58.9
THA.LOC104804218 Tarenaya hassleriana HOM05D005776 ORTHO05D007333 3.0e-35 152.5 165 49.7
arahy.Tifrunner.gnm1.ann1.TE9NQ7 Arachis hypogaea HOM05D005776 ORTHO05D007333 5.1e-35 151.8 163 54.0
EL10Ac2g03922 Beta vulgaris HOM05D005776 ORTHO05D007333 1.1e-34 150.6 137 56.2
CDE02G0814 Ceratophyllum demersum HOM05D005776 ORTHO05D007333 2.5e-34 149.4 175 48.0
Lsat_1_v5_gn_5_160121 Lactuca sativa HOM05D005776 ORTHO05D007333 5.6e-34 148.3 159 49.7
TAR628G1436 Trochodendron aralioides HOM05D005776 ORTHO05D007333 5.6e-34 148.3 94 76.6
unitig_578.g16073 Utricularia gibba HOM05D005776 ORTHO05D007333 7.3e-34 147.9 159 54.7
AT4G37200 Arabidopsis thaliana HOM05D005776 ORTHO05D007333 6.2e-33 144.8 164 47.6
Aa31LG6G13780 Aethionema arabicum HOM05D005776 ORTHO05D007333 8.1e-33 144.4 165 49.1
Duzib268G1673 Durio zibethinus HOM05D005776 ORTHO05D007333 1.1e-32 144.1 109 65.1
Os03g0767500 Oryza sativa ssp. japonica HOM05D005776 ORTHO05D007333 2.4e-32 142.9 98 70.4
Zm00001eb213990 Zea mays HOM05D005776 ORTHO05D007333 4.0e-32 142.1 122 60.7
Lalb_Chr09g0333671 Lupinus albus HOM05D005776 ORTHO05D007333 5.2e-32 141.7 104 63.5
ATR0733G088 Amborella trichopoda HOM05D005776 ORTHO05D007333 2.0e-31 139.8 98 67.3
HPP92_012224 Vanilla planifolia HOM05D005776 ORTHO05D007333 4.4e-31 138.7 175 49.7
Gohir.D02G142060 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.6e-25 120.2 73 79.5
Sc15g0005670 Simmondsia chinensis HOM05D005776 ORTHO05D007333 1.8e-24 116.7 62 85.5
Dinv26775 Davidia involucrata HOM05D005776 ORTHO05D007333 3.1e-24 115.9 159 50.3
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 8.4e-22 107.8 82 64.6
AagrBONN_evm.TU.Sc2ySwM_344.5430 Anthoceros agrestis HOM05D005776 ORTHO05D007333 7.8e-20 101.3 171 37.4
SMO329G0044 Selaginella moellendorffii HOM05D005776 ORTHO05D007333 1.3e-19 100.5 79 62.0
Mapoly0011s0067 Marchantia polymorpha HOM05D005776 ORTHO05D007333 5.1e-19 98.6 97 52.6
C01p10450 Brassica napus HOM05D005776 ORTHO05D007333 6.6e-19 98.2 117 47.0
Glyma.02G061600 Glycine max HOM05D005776 ORTHO05D035967 3.3e-18 95.9 164 41.5
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 2.6e-15 86.3 75 50.7
Glyma.11G060800 Glycine max HOM05D005776 ORTHO05D007333 3.4e-15 85.9 40 87.5
CSS0005566 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 7.6e-15 84.7 62 69.4
Gorai.005G159300 Gossypium raimondii HOM05D005776 ORTHO05D007333 4.9e-14 82.0 65 64.6
MD17G1248400 Malus domestica HOM05D005776 ORTHO05D007333 1.4e-13 80.5 53 71.7
MELO3C026070.2 Cucumis melo HOM05D005776 ORTHO05D007333 1.9e-13 80.1 92 48.9
TAR625G0882 Trochodendron aralioides HOM05D005776 ORTHO05D007333 3.2e-13 79.3 75 64.0
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 9.3e-13 77.8 109 41.3
Nn6g32162 Nelumbo nucifera HOM05D005776 ORTHO05D007333 9.3e-13 77.8 39 84.6
Gohir.A03G118600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 2.1e-12 76.6 37 89.2
Atru.chr3.470 Acer truncatum HOM05D005776 ORTHO05D007333 4.6e-12 75.5 141 38.3
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 7.9e-12 74.7 61 54.1
Zm00001eb226480 Zea mays HOM05D001594 ORTHO05D002862 2.5e-10 69.7 86 46.5
TAR625G0250 Trochodendron aralioides HOM05D005776 ORTHO05D007333 5.6e-10 68.6 29 96.6
PRCOL_00004254 Prasinoderma coloniale HOM05D005776 ORTHO05D007333 9.6e-10 67.8 67 46.3
VMungo0251G3041 Vigna mungo HOM05D005776 ORTHO05D035967 9.6e-10 67.8 147 37.4
Phvul.003G249400 Phaseolus vulgaris HOM05D005776 ORTHO05D035967 1.4e-08 63.9 71 53.5


User provided reference genes

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