Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.6e-102 375.6 214 100.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 5.5e-76 288.1 213 80.3
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 4.4e-73 278.5 214 78.5
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.7e-72 275.4 214 72.9
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-71 273.9 214 77.1
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 7.2e-68 261.2 215 73.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 7.2e-68 261.2 218 74.3
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.7e-67 258.5 214 74.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 6.7e-66 254.6 215 72.1
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-65 253.4 214 70.6
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 3.3e-65 252.3 216 73.1
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.3e-65 252.3 216 70.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.3e-65 252.3 214 67.8
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 5.7e-65 251.5 212 72.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.2e-64 249.6 214 72.9
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 2.8e-64 249.2 215 70.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.8e-64 249.2 226 66.8
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.1e-63 245.7 214 70.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.1e-63 245.4 214 67.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 5.3e-63 245.0 231 68.8
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.6e-62 243.4 214 67.8
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-62 243.4 216 71.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.5e-62 242.3 234 63.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.0e-61 240.7 215 67.0
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.3e-61 240.4 221 66.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.8e-61 238.8 216 69.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 5.0e-61 238.4 214 68.2
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.0e-61 238.4 214 65.9
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 5.0e-61 238.4 213 68.5
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.5e-61 238.0 229 62.9
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.1e-60 237.3 214 65.9
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.1e-60 237.3 214 71.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.9e-60 236.5 229 65.5
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.5e-60 236.1 214 68.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-60 235.7 229 65.9
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.2e-60 235.7 229 65.9
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.2e-60 235.7 226 66.4
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-60 235.3 221 66.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-60 235.3 221 66.1
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.2e-60 235.3 229 65.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.2e-60 235.3 214 70.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 9.4e-60 234.2 224 66.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 9.4e-60 234.2 214 67.8
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 9.4e-60 234.2 214 67.8
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-59 233.8 229 67.7
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.7e-59 232.6 216 70.8
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 3.6e-59 232.3 236 64.8
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 4.7e-59 231.9 214 66.8
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 8.0e-59 231.1 212 70.8
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 8.0e-59 231.1 215 69.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-58 229.6 236 62.3
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-58 229.6 236 62.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.0e-58 229.2 214 66.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.0e-58 228.8 195 70.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.0e-58 228.8 247 59.9
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.2e-57 227.3 223 65.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.0e-57 226.5 216 64.4
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.6e-57 226.1 220 69.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.6e-57 226.1 216 65.3
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.4e-57 225.7 221 66.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 4.8e-56 221.9 214 67.3
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 6.3e-56 221.5 202 67.8
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 8.3e-56 221.1 224 64.7
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.1e-55 220.7 222 67.1
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-55 220.3 241 58.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.1e-55 219.2 214 64.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 4.1e-55 218.8 214 64.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.4e-55 218.4 217 63.1
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.0e-55 218.0 127 87.4
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.1e-55 217.6 244 57.0
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 9.1e-55 217.6 222 65.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 9.1e-55 217.6 235 62.1
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-54 217.2 210 68.1
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 2.0e-54 216.5 216 65.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.7e-54 216.1 247 56.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.0e-53 214.2 127 89.0
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 2.9e-53 212.6 126 87.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 5.0e-53 211.8 214 58.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.5e-53 211.1 217 62.7
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.9e-52 209.9 126 83.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.2e-52 209.1 213 65.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 5.5e-52 208.4 126 86.5
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 7.2e-52 208.0 214 63.1
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.6e-51 206.8 255 57.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 3.6e-51 205.7 214 62.6
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 8.0e-51 204.5 127 83.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.8e-50 203.4 214 65.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.8e-50 203.4 214 64.5
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.8e-50 201.4 203 62.6
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.5e-49 200.3 252 56.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 2.0e-49 199.9 215 63.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 4.4e-49 198.7 124 83.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 5.7e-49 198.4 215 61.9
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 7.5e-49 198.0 219 61.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 9.8e-49 197.6 211 62.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.7e-48 196.8 122 82.8
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 6.3e-48 194.9 127 80.3
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.3e-48 194.9 226 54.9
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.3e-48 194.5 222 59.9
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 8.3e-48 194.5 222 58.6
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.1e-47 194.1 261 55.2
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 5.4e-47 191.8 219 60.3
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.0e-47 191.4 194 66.5
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.6e-46 190.3 222 59.0
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-45 186.8 214 59.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.7e-45 186.8 202 56.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.9e-45 186.0 130 79.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.9e-45 186.0 106 90.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.6e-45 184.9 214 57.5
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 6.6e-45 184.9 221 57.9
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.1e-44 184.1 212 58.5
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.5e-44 183.7 212 58.0
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.5e-44 183.0 212 58.5
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 7.3e-44 181.4 212 58.0
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.1e-43 179.9 171 69.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.1e-43 178.3 211 53.6
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.0e-42 175.6 207 54.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 6.8e-42 174.9 199 61.3
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.0e-41 173.3 217 50.2
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-39 167.5 125 72.8
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.8e-39 166.8 214 53.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.2e-39 164.5 172 62.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.6e-38 162.2 199 58.3
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.7e-37 160.2 175 61.7
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.0e-37 159.5 101 83.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.3e-36 156.0 126 65.1
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 4.3e-36 155.6 202 50.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 4.3e-36 155.6 202 50.5
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 9.5e-36 154.5 95 81.1
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.5e-36 154.5 216 50.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.7e-35 152.1 109 76.1
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 8.0e-35 151.4 125 64.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-34 150.6 127 66.9
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-33 146.4 217 48.4
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 9.8e-33 144.4 113 69.0
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 9.2e-31 137.9 133 60.9
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-30 137.1 214 52.3
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.0e-30 136.7 226 43.4
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-29 132.9 214 46.7
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 8.6e-29 131.3 139 61.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.3e-28 129.4 128 58.6
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.3e-28 129.0 140 53.6
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.2e-27 127.5 226 46.9
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.6e-27 127.1 171 53.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.7e-27 125.6 103 61.2
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.8e-26 123.6 138 62.3
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.0e-25 120.2 147 58.5
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.2e-23 111.3 82 73.2
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.1e-22 110.2 109 70.6
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 5.6e-20 102.1 79 69.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 6.8e-18 95.1 166 47.6
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.2e-16 90.1 109 62.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.4e-15 85.5 48 85.4
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 8.6e-13 78.2 88 45.5
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 2.5e-12 76.6 151 45.0
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 7.3e-12 75.1 65 60.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 4.7e-11 72.4 104 38.5
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.8e-10 70.5 41 75.6
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.9e-10 68.2 109 46.8
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 3.4e-09 66.2 94 45.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 7.6e-09 65.1 37 78.4
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 6.0e-06 55.5 46 65.2


User provided reference genes

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