Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.1e-62 243.0 119 100.0
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.5e-62 242.7 118 100.0
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 8.4e-34 147.1 122 61.5
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.3e-31 139.8 117 61.5
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 1.1e-30 136.7 121 55.4
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 9.6e-30 133.7 124 58.9
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 9.6e-30 133.7 124 58.9
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 8.2e-29 130.6 117 55.6
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 6.9e-28 127.5 122 56.6
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 2.0e-27 125.9 122 54.9
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 2.0e-27 125.9 122 53.3
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 2.0e-27 125.9 121 53.7
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.6e-27 125.6 122 55.7
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.3e-26 123.2 128 52.3
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 1.7e-26 122.9 123 52.0
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 2.2e-26 122.5 121 52.9
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 4.2e-25 118.2 119 55.5
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 1.6e-24 116.3 122 51.6
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-23 113.2 124 45.2
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.8e-23 112.8 121 50.4
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 3.0e-23 112.1 118 50.8
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 1.1e-22 110.2 123 45.5
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.5e-22 109.8 115 46.1
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.9e-22 109.4 119 47.9
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 2.5e-22 109.0 120 49.2
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-22 108.6 124 44.4
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 3.3e-22 108.6 114 49.1
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 7.4e-22 107.5 117 47.9
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.3e-21 106.7 109 50.5
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 1.3e-21 106.7 114 46.5
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 2.2e-21 105.9 117 47.0
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 2.8e-21 105.5 111 54.1
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 4.8e-21 104.8 111 49.5
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 1.1e-20 103.6 99 51.5
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 1.4e-20 103.2 123 46.3
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.4e-20 102.4 117 45.3
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 3.1e-20 102.1 116 51.7
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 3.1e-20 102.1 122 45.9
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 4.1e-20 101.7 107 51.4
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 4.1e-20 101.7 96 53.1
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 5.3e-20 101.3 104 48.1
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 6.9e-20 100.9 122 45.1
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 9.0e-20 100.5 103 48.5
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 1.2e-19 100.1 104 47.1
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 3.4e-19 98.6 115 45.2
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.7e-18 96.3 107 44.9
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 2.9e-18 95.5 122 41.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 3.8e-18 95.1 117 42.7
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 3.8e-18 95.1 117 43.6
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.8e-18 95.1 107 46.7
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 8.5e-18 94.0 118 46.6
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 1.9e-17 92.8 107 43.0
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.5e-17 92.4 119 39.5
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 7.2e-17 90.9 107 43.0
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 9.4e-17 90.5 107 43.9
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 9.4e-17 90.5 116 42.2
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 1.2e-16 90.1 102 46.1
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 3.6e-16 88.6 104 44.2
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.1e-14 83.6 120 39.2
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.5e-14 83.2 107 41.1
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 2.5e-14 82.4 112 36.6
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 3.3e-14 82.0 111 38.7
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 5.7e-14 81.3 114 36.8
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 7.4e-14 80.9 104 36.5
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 7.4e-14 80.9 114 39.5
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 7.4e-14 80.9 110 40.0
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 7.4e-14 80.9 104 37.5
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.3e-13 80.1 115 38.3
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 1.7e-13 79.7 99 42.4
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 2.8e-13 79.0 105 40.0
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 3.7e-13 78.6 114 38.6
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 4.8e-13 78.2 114 38.6
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 4.8e-13 78.2 121 41.3
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 6.3e-13 77.8 114 36.8
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 8.2e-13 77.4 112 35.7
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 8.2e-13 77.4 68 54.4
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.1e-12 77.0 114 37.7
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.1e-12 77.0 114 37.7
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.1e-12 77.0 118 38.1
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 1.8e-12 76.3 114 36.0
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 6.9e-12 74.3 117 35.0
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 1.2e-11 73.6 121 39.7
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 2.6e-11 72.4 99 40.4
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.7e-11 70.9 108 38.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.9e-10 68.9 116 38.8
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 8.5e-10 67.4 116 37.9
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.5e-10 67.4 116 37.9
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.5e-10 67.4 116 37.9
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 1.4e-09 66.6 108 41.7
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 1.9e-09 66.2 99 39.4
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 4.2e-09 65.1 135 34.8
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 7.2e-09 64.3 51 54.9
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 7.2e-09 64.3 85 37.6
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 7.2e-09 64.3 111 35.1
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 7.2e-09 64.3 99 37.4
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.6e-08 63.2 51 52.9
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.9e-07 58.5 140 29.3
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 3.3e-06 55.5 65 43.1
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 5.7e-06 54.7 54 50.0
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 7.4e-06 54.3 54 53.7
FvH4_2g17920 Fragaria vesca HOM05D002214 ORTHO05D045595 7.4e-06 54.3 42 59.5


User provided reference genes

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