Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.6e-189 663.7 339 100.0
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.9e-156 555.4 340 81.8
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.9e-156 555.4 340 81.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.8e-153 546.2 339 77.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.1e-146 522.7 337 78.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.0e-144 516.2 343 75.8
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.6e-141 506.5 340 74.1
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 7.7e-141 504.2 338 74.3
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 5.0e-140 501.5 341 72.1
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.5e-139 500.0 335 74.6
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 3.0e-137 492.3 334 72.2
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.4e-136 488.4 337 74.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.3e-135 486.9 335 71.6
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.7e-135 486.5 339 71.1
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.7e-135 485.3 340 69.4
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 8.3e-135 484.2 339 70.5
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.4e-134 483.4 336 70.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.4e-134 483.4 339 70.2
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 1.8e-134 483.0 323 72.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 4.1e-134 481.9 338 71.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.2e-133 480.3 342 69.0
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.2e-133 480.3 333 71.8
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.7e-133 479.2 339 70.5
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 4.5e-133 478.4 339 69.9
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.3e-132 476.1 332 69.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 3.8e-132 475.3 339 70.8
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.1e-131 473.8 261 89.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.1e-131 473.8 343 68.8
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 5.6e-131 471.5 336 68.5
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 7.3e-131 471.1 342 69.6
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.2e-130 470.3 335 70.7
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-130 470.3 345 67.5
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.7e-130 468.4 333 68.8
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 6.1e-130 468.0 335 68.1
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.1e-130 468.0 337 69.7
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 8.0e-130 467.6 335 70.7
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.8e-129 466.5 319 73.0
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.3e-129 466.1 344 67.2
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.9e-129 464.2 341 68.3
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.9e-129 464.2 344 66.9
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.4e-128 462.2 342 67.0
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 4.4e-128 461.8 344 67.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.8e-128 461.5 344 66.9
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.3e-127 460.3 339 69.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.7e-127 459.9 339 66.7
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.2e-127 459.5 342 66.7
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 2.2e-127 459.5 333 70.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 4.9e-127 458.4 342 66.7
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.9e-127 458.4 344 66.3
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 6.4e-127 458.0 341 67.7
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-126 456.8 326 68.4
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.4e-126 456.1 319 70.5
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 3.2e-126 455.7 316 71.2
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 4.1e-126 455.3 334 68.0
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 9.2e-126 454.1 338 66.3
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.6e-125 453.4 337 67.4
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.7e-124 449.9 338 66.3
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.0e-124 449.1 336 65.5
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 3.9e-124 448.7 337 67.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.0e-124 448.4 336 65.2
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 8.6e-124 447.6 339 67.0
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.5e-123 446.8 338 66.9
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.5e-123 446.0 333 65.5
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 4.3e-123 445.3 337 65.3
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 5.6e-123 444.9 335 67.2
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 7.3e-123 444.5 341 63.9
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 9.5e-123 444.1 330 66.7
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 9.5e-123 444.1 333 65.5
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-122 443.7 331 65.3
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.6e-122 443.4 341 63.9
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.1e-122 443.0 339 65.2
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.8e-122 442.6 338 66.6
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.8e-122 442.6 336 64.9
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 6.2e-122 441.4 339 63.7
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 8.0e-122 441.0 345 64.9
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.1e-121 440.7 316 68.7
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-121 440.7 339 63.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.1e-121 440.7 321 67.3
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-121 440.3 339 63.7
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 6.8e-121 438.0 339 63.7
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 8.9e-121 437.6 339 62.8
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-120 436.8 339 64.0
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 3.4e-120 435.6 316 68.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 4.4e-120 435.3 339 63.7
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 7.5e-120 434.5 335 65.7
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.9e-119 432.6 339 62.8
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 4.9e-119 431.8 330 64.2
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 8.3e-119 431.0 335 65.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.1e-118 430.6 336 64.6
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.9e-118 429.9 328 63.1
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.9e-118 429.9 328 63.1
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 4.1e-118 428.7 329 64.1
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.1e-117 426.4 368 58.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.7e-117 426.0 337 63.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 7.8e-117 424.5 333 64.3
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 3.9e-116 422.2 341 63.3
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 8.1e-114 414.5 321 63.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.3e-113 412.9 333 62.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.3e-113 412.9 326 64.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.3e-113 412.9 339 62.8
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 3.1e-113 412.5 327 63.9
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 7.5e-112 407.9 342 60.8
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.3e-111 407.1 316 64.6
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.7e-111 406.8 344 61.0
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-110 404.1 339 60.8
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.6e-109 400.2 339 60.5
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.7e-109 399.4 318 62.6
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 6.8e-105 384.8 335 61.2
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 4.7e-98 362.1 286 62.6
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.4e-94 348.6 253 68.8
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 6.4e-87 325.1 324 50.0
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.1e-86 321.6 331 53.8
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 7.4e-83 311.6 343 44.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 5.3e-73 278.9 347 41.2
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 7.1e-70 268.5 223 59.6
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.0e-63 248.1 184 64.1
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-63 247.3 184 64.1
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 2.1e-61 240.4 316 42.4
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 7.9e-61 238.4 254 52.0
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.8e-60 237.3 189 64.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.3e-55 221.1 144 71.5
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 4.2e-54 216.1 158 68.4
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 6.3e-50 202.2 137 71.5
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 3.5e-48 196.4 144 68.1
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.5e-48 196.1 99 100.0
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 5.2e-44 182.6 324 33.3
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 5.5e-38 162.5 121 69.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-37 160.6 118 61.9
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 8.0e-37 158.7 118 68.6
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 6.7e-36 155.6 121 60.3
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.5e-35 154.5 98 76.5
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-35 154.1 116 61.2
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 3.3e-35 153.3 284 31.0
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 4.4e-35 152.9 98 75.5
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 4.4e-35 152.9 98 75.5
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 6.3e-34 149.1 294 38.8
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 9.1e-33 145.2 340 29.7
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.2e-32 144.8 202 43.6
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.7e-32 143.7 99 67.7
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 6.1e-29 132.5 171 45.0
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.2e-28 129.4 164 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 5.7e-27 125.9 173 43.4
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.2e-26 124.0 84 71.4
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.2e-26 124.0 84 71.4
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.0e-23 115.2 140 46.4
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 8.6e-23 112.1 135 47.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 6.8e-20 102.4 123 48.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 7.8e-16 89.0 113 41.6
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.3e-15 87.4 99 47.5
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.1e-14 85.1 124 45.2
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.8e-11 72.8 79 53.2
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.4e-09 68.2 56 60.7
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 7.0e-09 65.9 46 65.2
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 2.7e-08 63.9 130 38.5
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 4.3e-06 56.6 40 60.0


User provided reference genes

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