Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.4e-248 860.5 434 100.0
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.0e-246 856.3 434 99.5
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.5e-216 755.4 436 87.6
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.8e-211 739.2 440 84.3
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 9.7e-205 716.8 434 83.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 6.3e-196 687.6 462 76.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 8.2e-196 687.2 434 79.5
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.7e-194 682.2 434 79.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.7e-194 680.6 434 78.6
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 5.0e-193 677.9 435 78.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 8.5e-193 677.2 434 77.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.2e-192 674.9 434 79.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.5e-192 674.5 436 75.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 9.4e-192 673.7 465 74.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.6e-191 671.8 436 76.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.4e-190 669.8 434 78.8
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.5e-189 666.4 433 76.4
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 3.7e-188 661.8 435 76.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.7e-188 661.8 436 75.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-187 660.2 444 75.0
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.8e-187 659.4 436 75.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.0e-186 656.0 436 75.5
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.0e-186 656.0 436 76.8
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.7e-186 655.6 432 75.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.7e-186 655.6 408 79.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 5.9e-186 654.4 436 72.7
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.9e-186 654.4 436 75.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.3e-184 648.7 436 73.2
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-184 648.7 436 74.5
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.2e-184 648.3 436 74.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 5.5e-184 647.9 436 76.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.2e-183 646.7 432 75.7
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.4e-182 643.3 430 74.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.0e-182 642.1 433 74.1
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.9e-182 640.6 430 73.7
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.6e-181 639.0 433 74.4
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.4e-181 638.6 435 73.8
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.7e-181 637.9 436 75.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.4e-179 632.5 435 73.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.4e-179 632.5 435 73.6
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.0e-179 630.9 435 73.3
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 9.2e-179 630.6 442 71.7
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-178 630.2 430 72.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.5e-178 628.2 430 72.8
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.3e-177 626.7 430 73.0
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.9e-177 625.5 435 74.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.9e-177 625.5 435 72.2
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.9e-177 625.5 433 73.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 6.6e-177 624.4 430 73.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-176 623.6 390 80.3
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 9.5e-176 620.5 430 72.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.7e-175 618.2 430 71.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-172 609.8 390 79.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.9e-172 609.0 433 69.3
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.4e-172 607.8 430 71.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.1e-171 607.1 433 71.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.1e-171 605.1 436 69.7
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.2e-170 603.6 435 68.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.7e-169 599.7 433 70.9
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.7e-169 599.7 436 69.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 4.0e-166 588.6 435 70.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.6e-165 585.9 416 73.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.8e-165 584.7 437 69.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.4e-164 581.3 452 65.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 9.2e-163 577.4 453 64.7
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.2e-162 577.0 433 68.6
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.2e-162 577.0 433 68.6
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 6.0e-162 574.7 400 71.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.3e-161 573.5 432 64.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.3e-161 573.5 401 72.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 6.6e-161 571.2 447 64.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.5e-160 570.1 432 64.8
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.3e-160 568.5 435 70.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.4e-158 563.5 439 65.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 5.2e-158 561.6 443 65.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.5e-157 560.1 436 65.4
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 7.5e-157 557.8 456 60.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.7e-156 556.6 445 66.5
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.2e-156 556.2 433 63.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.1e-155 553.9 431 62.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.4e-155 552.7 434 63.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.2e-155 552.4 433 68.1
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.2e-154 550.4 450 61.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.5e-154 548.9 440 67.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 7.8e-154 547.7 448 61.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.0e-153 547.4 466 65.5
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.7e-153 546.6 435 65.7
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.7e-153 546.6 435 66.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.0e-153 545.8 438 66.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 5.1e-153 545.0 454 60.8
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 6.6e-153 544.7 455 60.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.2e-151 538.1 421 64.4
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-150 537.3 430 63.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.4e-150 537.0 453 60.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.1e-150 535.8 453 60.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 3.1e-150 535.8 436 62.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.8e-150 534.6 382 72.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.7e-148 530.0 389 68.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.7e-148 530.0 434 62.4
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.9e-148 528.5 394 67.8
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.8e-146 521.2 307 84.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.0e-145 520.8 394 67.5
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.9e-145 518.8 394 67.3
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.9e-144 516.5 383 66.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.1e-143 513.1 346 74.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.8e-143 511.9 319 80.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.1e-143 511.1 379 68.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.7e-140 503.4 300 84.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-138 497.3 344 74.1
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.7e-138 496.1 433 59.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.9e-136 490.0 430 57.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.9e-134 481.5 421 58.4
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.3e-132 477.2 433 57.0
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.4e-131 473.0 386 64.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.2e-131 472.2 433 59.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.7e-127 459.1 332 68.7
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 5.5e-123 445.3 437 55.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.3e-121 439.9 431 55.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.6e-120 434.5 350 63.4
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.0e-113 412.9 279 73.1
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.0e-109 400.2 279 70.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.7e-109 398.3 279 72.4
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.2e-108 396.7 279 71.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.8e-103 379.8 279 68.5
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.4e-102 376.7 280 67.9
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 5.9e-101 372.1 322 62.7
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 3.6e-98 362.8 292 61.3
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 3.3e-96 356.3 351 55.6
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 4.8e-95 352.4 440 48.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.1e-90 337.0 230 69.6
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 9.7e-88 328.2 366 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.7e-87 327.4 327 49.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.5e-76 288.5 214 65.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.2e-75 286.2 156 91.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.2e-75 286.2 156 91.7
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 9.4e-75 285.0 155 92.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.7e-74 283.5 157 91.7
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 5.7e-72 275.8 157 89.8
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 7.0e-70 268.9 276 51.1
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.6e-69 267.7 156 86.5
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.5e-69 266.5 162 74.7
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 4.5e-69 266.2 509 38.3
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-68 264.2 145 92.4
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.4e-62 243.8 233 55.8
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.7e-60 237.7 133 91.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.9e-60 236.9 141 84.4
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 8.9e-57 225.3 182 65.4
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 8.9e-57 225.3 184 65.2
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.0e-52 210.3 122 86.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 8.6e-52 208.8 154 63.6
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.4e-48 196.8 132 81.1
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.4e-46 191.4 466 32.4
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.1e-46 189.1 307 40.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-42 177.9 99 91.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.3e-39 168.3 178 55.6
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.9e-39 167.2 106 79.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.3e-36 158.3 129 61.2
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.2e-32 145.2 117 63.2
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-31 140.6 146 54.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.3e-28 131.7 99 65.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.9e-23 114.0 210 36.2
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-22 112.1 68 85.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.7e-21 107.5 56 98.2
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.0e-20 104.0 58 91.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-15 87.8 78 61.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 8.4e-15 85.9 197 32.5
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.7e-13 80.9 65 58.5
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 8.7e-12 75.9 57 64.9
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-06 57.8 50 62.0


User provided reference genes

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