Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.6e-108 394.0 198 100.0
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.6e-108 394.0 198 100.0
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.6e-106 389.4 198 99.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 5.2e-97 357.8 198 90.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.8e-89 332.8 195 84.1
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 2.0e-88 329.3 196 85.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 9.6e-83 310.5 246 68.7
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 6.2e-82 307.8 198 76.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.4e-80 302.0 228 69.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.2e-78 295.0 231 68.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 4.6e-77 291.6 198 72.7
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.7e-76 289.7 196 70.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 9.6e-75 283.9 225 66.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.8e-74 282.3 198 69.2
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.2e-72 276.9 196 68.4
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.5e-72 276.6 195 66.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 2.6e-72 275.8 199 69.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.3e-71 273.5 197 67.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 4.9e-71 271.6 225 61.3
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 8.4e-71 270.8 200 68.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.4e-70 270.0 198 66.2
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.4e-70 269.2 198 66.7
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 9.3e-70 267.3 224 62.1
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 9.3e-70 267.3 225 61.3
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.2e-69 266.9 231 62.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.2e-69 266.9 231 61.9
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.5e-69 265.4 200 63.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.6e-69 265.0 198 65.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 4.6e-69 265.0 228 61.8
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 6.0e-69 264.6 199 65.8
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 6.0e-69 264.6 201 66.7
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 7.9e-69 264.2 201 66.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 7.9e-69 264.2 228 61.4
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.8e-68 263.1 198 64.6
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.7e-68 261.2 199 64.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 6.7e-68 261.2 200 65.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 8.7e-68 260.8 194 63.4
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.5e-67 259.2 198 64.1
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 3.3e-67 258.8 195 65.1
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 5.6e-67 258.1 202 63.9
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 7.4e-67 257.7 206 66.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 7.4e-67 257.7 201 65.7
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.6e-67 257.3 202 64.9
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.1e-66 256.1 222 61.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.1e-66 256.1 199 63.8
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-66 255.0 201 63.7
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.8e-66 255.0 201 63.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.4e-65 253.4 200 63.5
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.4e-65 253.4 229 57.6
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.4e-65 253.4 189 63.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.4e-65 252.7 200 62.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 3.1e-65 252.3 200 63.0
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 5.3e-65 251.5 201 63.2
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.2e-64 250.4 199 61.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.2e-64 250.4 200 61.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.5e-64 250.0 200 62.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.6e-64 249.2 194 61.3
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.5e-64 248.4 199 62.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.0e-63 247.3 197 59.9
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.0e-63 247.3 202 59.4
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.0e-63 247.3 199 60.8
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.9e-63 245.7 202 59.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 3.8e-63 245.4 194 58.8
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 6.5e-63 244.6 202 60.4
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 6.5e-63 244.6 200 61.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 8.4e-63 244.2 198 61.1
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.1e-62 243.8 193 61.1
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-62 243.4 193 63.7
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.9e-62 243.0 199 58.3
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.5e-62 242.7 202 57.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.5e-62 242.7 196 66.8
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.5e-62 242.7 197 59.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.2e-62 242.3 199 58.3
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 4.2e-62 241.9 200 59.0
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.2e-62 241.9 198 61.1
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.2e-62 241.9 198 61.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 7.1e-62 241.1 202 58.4
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 7.1e-62 241.1 202 57.4
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 9.3e-62 240.7 202 57.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-61 240.4 197 58.9
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-61 239.6 197 58.9
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.7e-61 239.2 203 62.1
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.5e-61 238.8 190 61.1
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 4.6e-61 238.4 199 57.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 4.6e-61 238.4 199 57.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 4.6e-61 238.4 202 56.9
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 4.6e-61 238.4 201 61.2
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.6e-61 238.4 198 60.1
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 1.3e-60 236.9 183 66.1
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.8e-60 236.5 191 58.6
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.0e-60 235.7 191 59.2
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 3.9e-60 235.3 192 61.5
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.1e-60 235.0 191 59.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.7e-60 234.6 200 56.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.7e-60 234.6 200 56.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 8.7e-60 234.2 150 76.7
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.9e-59 233.0 194 59.3
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 5.7e-59 231.5 199 59.8
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 7.4e-59 231.1 250 48.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-58 230.3 202 54.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.6e-58 229.9 193 58.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.7e-58 228.8 200 57.5
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.4e-57 226.1 190 58.9
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.9e-57 224.6 189 64.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 9.0e-57 224.2 200 54.0
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.0e-56 223.0 169 65.7
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 2.0e-56 223.0 190 59.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 2.0e-56 223.0 193 54.9
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.6e-56 222.6 193 56.0
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.5e-56 221.9 172 62.8
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.9e-55 219.2 267 46.8
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.3e-52 210.3 157 67.5
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 6.7e-52 208.0 195 51.8
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.3e-50 203.8 198 53.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.6e-50 203.4 193 50.8
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.4e-49 199.5 189 50.3
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 3.1e-49 199.1 195 50.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 6.9e-49 198.0 145 69.0
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 9.0e-49 197.6 190 55.8
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 5.9e-48 194.9 195 47.7
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 4.6e-45 185.3 148 60.1
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.1e-45 184.9 199 47.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.1e-45 184.9 199 47.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 3.9e-44 182.2 149 59.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.5e-43 179.5 143 62.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 9.7e-43 177.6 194 49.5
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 4.8e-42 175.3 144 59.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.4e-40 169.1 134 60.4
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.0e-39 167.5 152 57.2
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 2.9e-39 166.0 116 69.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.9e-38 163.3 195 41.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.2e-38 162.5 154 51.9
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.7e-37 158.7 198 46.0
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.7e-34 150.2 202 39.6
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 4.8e-34 148.7 191 46.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.1e-33 147.5 120 58.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.4e-33 146.4 197 41.1
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 7.0e-33 144.8 175 48.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.6e-32 143.7 119 61.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 6.5e-31 138.3 195 34.4
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 2.7e-29 132.9 110 58.2
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.7e-28 128.3 118 53.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.5e-27 127.1 113 54.9
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.1e-25 120.9 111 51.4
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-23 113.2 86 62.8
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.9e-23 112.8 57 98.2
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 6.5e-23 111.7 110 51.8
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 3.0e-20 102.8 82 64.6
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-19 100.9 49 100.0
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.0e-19 100.1 203 30.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-18 97.4 197 36.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 8.3e-18 94.7 125 47.2
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.6e-16 90.5 204 28.4
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-15 87.8 59 72.9
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.7e-15 87.0 66 60.6
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 4.9e-10 68.9 49 69.4
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 8.6e-07 58.2 181 26.5


User provided reference genes

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