Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 2.9e-33 144.4 64 100.0
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 8.3e-28 126.3 62 88.7
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 1.9e-24 115.2 62 82.3
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 1.9e-24 115.2 62 80.6
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 3.3e-24 114.4 62 80.6
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 4.3e-24 114.0 62 79.0
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 9.5e-24 112.8 62 79.0
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 9.5e-24 112.8 62 79.0
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 3.6e-23 110.9 62 74.2
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 3.6e-23 110.9 62 74.2
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 6.1e-23 110.2 62 74.2
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 8.0e-23 109.8 62 74.2
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 1.0e-22 109.4 62 75.8
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 1.4e-22 109.0 62 74.2
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 1.4e-22 109.0 62 75.8
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 1.8e-22 108.6 62 74.2
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 1.8e-22 108.6 62 74.2
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 1.8e-22 108.6 61 78.7
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 2.3e-22 108.2 64 75.0
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 2.3e-22 108.2 62 74.2
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 3.0e-22 107.8 62 74.2
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 4.0e-22 107.5 62 74.2
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.0e-21 105.1 62 72.6
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.0e-21 105.1 62 72.6
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 2.0e-21 105.1 62 72.6
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 2.0e-21 105.1 62 74.2
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 2.6e-21 104.8 62 74.2
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 2.6e-21 104.8 62 71.0
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 74.2
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 74.2
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 72.6
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 72.6
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 72.6
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 3.4e-21 104.4 62 72.6
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 4.4e-21 104.0 62 72.6
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 7.5e-21 103.2 62 67.7
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 7.5e-21 103.2 62 67.7
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 9.8e-21 102.8 62 71.0
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 9.8e-21 102.8 62 71.0
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 9.8e-21 102.8 62 72.6
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 9.8e-21 102.8 62 72.6
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 1.3e-20 102.4 62 72.6
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 1.7e-20 102.1 62 75.8
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.7e-20 102.1 61 72.1
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 1.7e-20 102.1 62 72.6
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 2.2e-20 101.7 62 71.0
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 2.2e-20 101.7 59 71.2
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 2.2e-20 101.7 64 68.8
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 2.2e-20 101.7 62 66.1
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 2.9e-20 101.3 62 71.0
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 2.9e-20 101.3 62 71.0
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 2.9e-20 101.3 62 71.0
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 2.9e-20 101.3 62 69.4
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 2.9e-20 101.3 62 67.7
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 2.9e-20 101.3 59 74.6
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 3.7e-20 100.9 62 69.4
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 3.7e-20 100.9 64 68.8
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 4.9e-20 100.5 62 71.0
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 6.4e-20 100.1 62 66.1
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 6.4e-20 100.1 62 69.4
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 6.4e-20 100.1 62 69.4
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 6.4e-20 100.1 62 67.7
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 8.3e-20 99.8 62 69.4
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 8.3e-20 99.8 62 69.4
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 8.3e-20 99.8 62 66.1
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 1.1e-19 99.4 58 72.4
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.1e-19 99.4 61 68.9
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.4e-19 99.0 62 69.4
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.4e-19 99.0 62 69.4
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 1.4e-19 99.0 62 69.4
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 1.4e-19 99.0 62 66.1
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 1.8e-19 98.6 62 67.7
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 2.4e-19 98.2 64 68.8
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 2.4e-19 98.2 62 67.7
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 2.4e-19 98.2 61 68.9
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 2.4e-19 98.2 60 70.0
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 3.2e-19 97.8 62 66.1
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 3.2e-19 97.8 61 68.9
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 4.1e-19 97.4 62 67.7
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 4.1e-19 97.4 62 69.4
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 4.1e-19 97.4 64 68.8
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 64.5
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 66.1
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 69.4
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 64.5
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 67.7
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 5.4e-19 97.1 62 66.1
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 1.2e-18 95.9 62 67.7
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 1.2e-18 95.9 62 67.7
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 1.2e-18 95.9 62 67.7
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 1.6e-18 95.5 62 67.7
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.0e-18 95.1 63 69.8
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.0e-18 95.1 63 69.8
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.0e-18 95.1 63 69.8
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 2.0e-18 95.1 64 65.6
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 2.7e-18 94.7 64 64.1
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 4.6e-18 94.0 61 65.6
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 5.9e-18 93.6 60 65.0
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 7.8e-18 93.2 64 64.1
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 7.8e-18 93.2 62 64.5
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 1.0e-17 92.8 61 63.9
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 1.3e-17 92.4 89 52.8
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 3.9e-17 90.9 62 62.9
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 4.3e-16 87.4 62 62.9
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 4.3e-16 87.4 50 76.0
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 4.7e-15 84.0 60 58.3
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 6.2e-15 83.6 56 66.1
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 6.2e-15 83.6 50 74.0
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.4e-14 82.4 55 67.3
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 1.4e-14 82.4 62 56.5
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.8e-14 82.0 59 61.0
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 4.0e-14 80.9 60 60.0
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 1.3e-12 75.9 60 56.7
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 1.3e-12 75.9 59 57.6
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 1.7e-12 75.5 54 61.1
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 2.9e-12 74.7 54 57.4
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.4e-11 71.6 64 56.2
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 5.4e-11 70.5 56 58.9
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 5.4e-11 70.5 56 58.9
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.7e-09 65.5 59 52.5
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 8.9e-06 53.1 78 38.5
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 8.9e-06 53.1 59 45.8


User provided reference genes

Program Settings