Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0168F.1_g074310 Hydrangea macrophylla HOM05D005705 ORTHO05D007152 3.2e-184 648.3 323 100.0
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 1.3e-137 493.4 355 73.0
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 1.1e-131 473.8 361 69.3
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 2.0e-130 469.5 362 68.8
Solyc03g097550.3 Solanum lycopersicum HOM05D005705 ORTHO05D007152 5.9e-130 468.0 359 68.2
Sopen03g028300 Solanum pennellii HOM05D005705 ORTHO05D007152 1.7e-129 466.5 359 68.0
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 6.5e-129 464.5 363 68.6
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 1.9e-128 463.0 356 69.4
CAN.G732.1 Capsicum annuum HOM05D005705 ORTHO05D007152 1.2e-127 460.3 364 66.5
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 1.2e-127 460.3 361 67.9
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 2.7e-127 459.1 353 66.9
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 1.8e-126 456.4 365 64.9
Atru.chr6.1874 Acer truncatum HOM05D005705 ORTHO05D007152 1.5e-122 443.4 368 64.4
CANSAT80G2532 Cannabis sativa HOM05D005705 ORTHO05D007152 1.5e-122 443.4 370 63.2
vmacro19145 Vaccinium macrocarpon HOM05D005705 ORTHO05D007152 2.0e-122 443.0 350 67.7
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 1.3e-121 440.3 364 65.4
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 1.3e-121 440.3 362 64.9
TWI14G0152 Tripterygium wilfordii HOM05D005705 ORTHO05D007152 5.0e-121 438.3 367 62.4
Potri.015G101300 Populus trichocarpa HOM05D005705 ORTHO05D007152 1.1e-120 437.2 368 62.8
Actinidia18330 Actinidia chinensis HOM05D005705 ORTHO05D007152 5.5e-120 434.9 334 68.9
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 9.4e-120 434.1 371 63.1
VMungo1309G0782 Vigna mungo HOM05D005705 ORTHO05D007152 1.2e-119 433.7 364 63.2
CiPaw.11G003500 Carya illinoinensis HOM05D005705 ORTHO05D007152 2.7e-119 432.6 365 64.4
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 3.6e-119 432.2 362 64.4
Phvul.009G162600 Phaseolus vulgaris HOM05D005705 ORTHO05D007152 7.9e-119 431.0 363 64.2
ECA247G0704 Erigeron canadensis HOM05D005705 ORTHO05D007152 1.0e-118 430.6 362 65.2
Lj5A92G46 Lonicera japonica HOM05D005705 ORTHO05D007152 1.0e-118 430.6 441 56.2
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 1.4e-118 430.3 364 64.3
Lalb_Chr08g0237371 Lupinus albus HOM05D005705 ORTHO05D007152 1.8e-118 429.9 363 62.8
FAN13G0195 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.3e-118 429.5 369 63.1
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 3.0e-118 429.1 363 63.6
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 2.0e-117 426.4 368 61.7
FAN18G0862 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.6e-117 426.0 373 62.2
Psat5g053040 Pisum sativum HOM05D005705 ORTHO05D007152 9.7e-117 424.1 364 62.4
Lsat_1_v5_gn_1_32681 Lactuca sativa HOM05D005705 ORTHO05D007152 1.3e-116 423.7 361 64.8
CSS0038740 Camellia sinensis var. sinensis HOM05D005705 ORTHO05D007152 1.7e-116 423.3 386 61.1
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 2.2e-116 422.9 361 62.9
Ciclev10031733m.g Citrus clementina HOM05D005705 ORTHO05D007152 2.8e-116 422.5 353 64.9
HanXRQChr02g0034161 Helianthus annuus HOM05D005705 ORTHO05D007152 6.3e-116 421.4 361 63.7
arahy.Tifrunner.gnm1.ann1.5ZS0BP Arachis hypogaea HOM05D005705 ORTHO05D007152 1.4e-115 420.2 373 61.1
Lj1g0017194 Lotus japonicus HOM05D005705 ORTHO05D007152 1.4e-115 420.2 365 63.0
FAN08G2466 Fragaria x ananassa HOM05D005705 ORTHO05D007152 4.1e-115 418.7 376 61.2
Ca_16064_v3 Cicer arietinum L. HOM05D005705 ORTHO05D007152 1.5e-114 416.8 353 62.3
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 2.6e-114 416.0 353 63.2
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 1.7e-113 413.3 277 77.3
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 6.5e-113 411.4 362 61.3
Thecc.03G135500 Theobroma cacao HOM05D005705 ORTHO05D007152 6.5e-113 411.4 355 62.0
Gorai.003G119300 Gossypium raimondii HOM05D005705 ORTHO05D007152 1.1e-112 410.6 363 60.1
Sc22g0003610 Simmondsia chinensis HOM05D005705 ORTHO05D007152 1.2e-111 407.1 394 56.6
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 2.1e-111 406.4 353 61.2
ClCG06G018130 Citrullus lanatus HOM05D005705 ORTHO05D007152 2.7e-111 406.0 364 60.4
Eucgr.B00082 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.6e-111 405.6 353 61.2
Eucgr.K02692 Eucalyptus grandis HOM05D005705 ORTHO05D007152 4.7e-111 405.2 368 59.2
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 6.1e-111 404.8 351 60.4
Gohir.D03G113100 Gossypium hirsutum HOM05D005705 ORTHO05D007152 6.1e-111 404.8 363 59.8
TAR374G1739 Trochodendron aralioides HOM05D005705 ORTHO05D007152 2.3e-110 402.9 317 69.4
arahy.Tifrunner.gnm1.ann1.U15GQW Arachis hypogaea HOM05D005705 ORTHO05D007152 1.7e-108 396.7 393 56.0
Eucgr.F01610 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.7e-108 396.7 353 60.3
MD06G1136700 Malus domestica HOM05D005705 ORTHO05D007152 1.1e-107 394.0 362 59.7
ECA247G2912 Erigeron canadensis HOM05D005705 ORTHO05D007152 2.5e-104 382.9 354 61.3
PGR044G0296 Punica granatum HOM05D005705 ORTHO05D007152 3.2e-104 382.5 361 57.9
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 4.2e-104 382.1 353 59.2
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 1.4e-102 377.1 369 56.9
Zm00001eb241970 Zea mays HOM05D005705 ORTHO05D007152 5.2e-102 375.2 357 56.3
TPR.G35256 Trifolium pratense HOM05D005705 ORTHO05D007152 8.8e-102 374.4 363 58.1
FAN04G2238 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.5e-101 373.6 405 54.1
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 1.5e-101 373.6 353 57.8
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 3.3e-101 372.5 364 55.5
QL10p001835 Quercus lobata HOM05D005705 ORTHO05D007152 9.7e-101 370.9 502 46.4
FvH4_5g08961 Fragaria vesca HOM05D005705 ORTHO05D007152 6.3e-100 368.2 278 68.3
Haze_07188 Corylus avellana HOM05D005705 ORTHO05D007152 1.4e-99 367.1 307 63.5
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 2.4e-99 366.3 354 56.5
Prupe.5G146600 Prunus persica HOM05D005705 ORTHO05D007152 2.4e-99 366.3 362 57.2
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 2.4e-99 366.3 352 57.7
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 5.3e-99 365.2 353 58.1
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 1.6e-98 363.6 352 56.5
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 4.5e-98 362.1 353 57.5
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 5.9e-98 361.7 352 56.2
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 1.3e-97 360.5 354 57.9
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 1.7e-97 360.1 341 58.1
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 1.7e-97 360.1 352 56.8
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 2.2e-97 359.8 354 56.8
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 2.9e-97 359.4 352 55.7
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 2.9e-97 359.4 369 55.3
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 3.8e-97 359.0 341 58.9
Sed0013194 Sechium edule HOM05D005705 ORTHO05D007152 3.8e-97 359.0 292 64.7
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 5.0e-97 358.6 353 56.9
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 1.1e-96 357.5 341 58.7
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 1.5e-96 357.1 343 58.3
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 1.9e-96 356.7 351 55.8
Gohir.A03G053840 Gossypium hirsutum HOM05D005705 ORTHO05D007152 5.5e-96 355.1 366 54.9
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 3.6e-95 352.4 342 57.6
RcHm_v2.0_Chr7g0189401 Rosa chinensis HOM05D005705 ORTHO05D007152 1.7e-92 343.6 282 64.5
Nn4g22223 Nelumbo nucifera HOM05D005705 ORTHO05D007152 3.7e-92 342.4 363 55.9
PGSC0003DMG400031733 Solanum tuberosum HOM05D005705 ORTHO05D007152 3.5e-90 335.9 235 73.2
Oeu061128.1 Olea europaea HOM05D005705 ORTHO05D007152 8.6e-89 331.3 415 48.9
MSTRG.4614 Avicennia marina HOM05D005705 ORTHO05D007152 6.1e-87 325.1 243 69.5
Eucgr.K02689 Eucalyptus grandis HOM05D005705 ORTHO05D007152 6.8e-86 321.6 347 52.2
Ah.11g046430 Amaranthus hybridus HOM05D005705 ORTHO05D007152 1.5e-85 320.5 373 51.5
Duzib084G0308 Durio zibethinus HOM05D005705 ORTHO05D007152 1.5e-85 320.5 359 51.3
MELO3C026185.2 Cucumis melo HOM05D005705 ORTHO05D007152 2.6e-85 319.7 365 51.0
HPP92_015136 Vanilla planifolia HOM05D005705 ORTHO05D007152 2.6e-85 319.7 340 51.2
SGA_v2.0_scaffold37G14637 Striga asiatica HOM05D005705 ORTHO05D007152 9.5e-80 301.2 355 49.9
Gohir.A03G053960 Gossypium hirsutum HOM05D005705 ORTHO05D007152 2.1e-79 300.1 237 62.9
Eucgr.K02697 Eucalyptus grandis HOM05D005705 ORTHO05D007152 6.8e-78 295.0 366 48.1
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 1.1e-75 287.7 353 50.4
Pp3c10_5730 Physcomitrium patens HOM05D005705 ORTHO05D007152 2.3e-73 280.0 328 47.3
AUR62034819 Chenopodium quinoa HOM05D005705 ORTHO05D007152 5.6e-72 275.4 354 47.2
AUR62029555 Chenopodium quinoa HOM05D005705 ORTHO05D007152 3.6e-71 272.7 354 46.9
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 8.0e-71 271.6 328 47.9
CDE02G4520 Ceratophyllum demersum HOM05D005705 ORTHO05D007152 3.4e-69 266.2 238 61.8
Hund10107 Selenicereus undatus HOM05D005705 ORTHO05D007152 3.4e-61 239.6 289 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2453 Anthoceros agrestis HOM05D005705 ORTHO05D007152 1.7e-60 237.3 224 55.8
Cpa.g.sc4.149 Carica papaya HOM05D005705 ORTHO05D007152 4.7e-55 219.2 166 65.1
Pp3c10_5680 Physcomitrium patens HOM05D005705 ORTHO05D007152 2.2e-44 183.7 196 52.6
Os02g0512300 Oryza sativa ssp. japonica HOM05D005705 ORTHO05D007152 3.6e-39 166.4 130 62.3
MBI11_g13060_MAGBIO Magnolia biondii HOM05D005705 ORTHO05D007152 9.0e-38 161.8 144 61.8
CBR_g48327 Chara braunii HOM05D005705 ORTHO05D007152 3.4e-37 159.8 196 48.5
Haze_27069 Corylus avellana HOM05D005705 ORTHO05D007152 7.9e-34 148.7 217 39.2
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.5e-32 143.7 221 38.5
Cre17.g702400 Chlamydomonas reinhardtii HOM05D005705 ORTHO05D007152 1.6e-31 141.0 319 33.9
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 6.4e-28 129.0 312 29.8
Gohir.D03G113075 Gossypium hirsutum HOM05D005705 ORTHO05D007152 6.7e-25 119.0 121 57.0
MCO02G106 Micromonas commoda HOM05D005705 ORTHO05D007152 1.6e-23 114.4 186 37.6
arahy.Tifrunner.gnm1.ann1.N812UT Arachis hypogaea HOM05D005705 ORTHO05D007152 1.4e-22 111.3 64 84.4
Cpa.g.sc4.148 Carica papaya HOM05D005705 ORTHO05D007152 2.4e-22 110.5 92 67.4
arahy.Tifrunner.gnm1.ann1.MH3CCF Arachis hypogaea HOM05D001440 ORTHO05D007152 9.0e-22 108.6 65 81.5
arahy.Tifrunner.gnm1.ann1.5M4P4Y Arachis hypogaea HOM05D005705 ORTHO05D007152 1.5e-21 107.8 67 79.1
arahy.Tifrunner.gnm1.ann1.WM01PM Arachis hypogaea HOM05D001440 ORTHO05D013218 2.0e-21 107.5 65 80.0
arahy.Tifrunner.gnm1.ann1.DA2DAM Arachis hypogaea HOM05D005705 ORTHO05D007152 1.1e-19 101.7 64 79.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.9e-19 100.9 85 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1098 Anthoceros agrestis HOM05D005705 ORTHO05D007152 3.4e-13 80.1 50 72.0
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 3.0e-09 67.0 235 26.4
Eucgr.K02687 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.3e-07 61.6 65 47.7
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 2.4e-06 57.4 203 26.6
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 3.1e-06 57.0 160 30.0


User provided reference genes

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