Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 1.7e-134 482.6 246 100.0
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 4.4e-77 292.0 247 68.8
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 1.8e-75 286.6 247 68.0
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.7e-73 280.0 243 66.7
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 2.4e-67 259.6 244 63.5
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 5.0e-57 225.3 248 56.5
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.1e-56 224.2 246 57.7
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 9.5e-56 221.1 230 57.4
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 2.1e-55 219.9 248 55.2
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 3.6e-55 219.2 249 56.2
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.4e-54 217.2 250 55.2
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.8e-54 216.9 247 55.1
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 3.1e-54 216.1 248 55.2
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 4.0e-54 215.7 251 54.2
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 2.0e-53 213.4 244 55.7
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 4.4e-53 212.2 250 54.4
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 9.8e-53 211.1 251 54.6
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 1.4e-51 207.2 245 53.9
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 4.1e-51 205.7 250 52.8
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.1e-51 205.7 245 52.7
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.0e-50 203.4 247 51.4
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 2.7e-50 203.0 248 52.0
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.7e-50 203.0 243 53.1
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 6.0e-50 201.8 246 52.8
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 7.8e-50 201.4 245 53.5
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 8.6e-49 198.0 243 52.7
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 8.6e-49 198.0 247 50.6
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.9e-48 196.8 243 53.1
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 2.5e-48 196.4 248 54.4
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 5.6e-48 195.3 249 50.6
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 2.1e-47 193.4 250 52.4
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 2.1e-47 193.4 250 52.4
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 8.1e-47 191.4 251 51.0
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.4e-46 190.7 243 51.4
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 2.3e-46 189.9 247 50.2
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 4.0e-46 189.1 245 50.2
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 1.2e-45 187.6 212 54.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 2.0e-45 186.8 248 49.2
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 3.4e-45 186.0 210 56.2
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.7e-44 183.7 210 55.7
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 4.1e-43 179.1 214 54.2
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 9.2e-43 177.9 252 46.0
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.6e-42 177.2 212 51.9
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 1.3e-41 174.1 252 48.8
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 8.6e-41 171.4 253 48.6
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 8.6e-41 171.4 247 48.6
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.1e-40 171.0 254 49.2
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 3.3e-40 169.5 249 47.4
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 4.3e-40 169.1 241 47.7
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 5.6e-40 168.7 250 45.2
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 7.3e-40 168.3 211 49.3
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 9.5e-40 167.9 211 49.3
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 1.2e-39 167.5 218 50.9
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.2e-39 167.5 242 45.9
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.6e-39 167.2 245 48.6
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.6e-39 167.2 247 47.8
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 6.2e-39 165.2 212 50.5
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 8.1e-39 164.9 245 46.9
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.1e-38 164.5 214 50.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 1.8e-38 163.7 235 46.4
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 4.0e-38 162.5 218 50.0
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 6.8e-38 161.8 247 46.2
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.2e-37 161.0 211 51.2
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.5e-37 160.6 226 48.7
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 3.4e-37 159.5 130 64.6
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 3.4e-37 159.5 237 46.0
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 5.8e-37 158.7 232 48.7
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 5.8e-37 158.7 205 50.2
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 7.6e-37 158.3 242 45.0
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 2.9e-36 156.4 203 48.8
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 2.9e-36 156.4 240 45.0
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 2.9e-36 156.4 252 47.2
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-35 153.7 247 44.9
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 1.6e-34 150.6 246 43.5
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.7e-33 147.1 223 44.8
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.3e-33 146.7 213 46.5
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 5.1e-33 145.6 246 41.9
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.1e-32 144.4 201 47.3
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.1e-32 144.4 202 48.5
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.5e-32 144.1 243 43.6
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 2.5e-32 143.3 203 48.3
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 7.3e-32 141.7 215 46.0
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 2.4e-30 136.7 244 42.2
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 3.1e-30 136.3 220 45.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 2.4e-27 126.7 261 36.4
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 5.4e-27 125.6 236 41.1
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 1.2e-26 124.4 238 42.4
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.6e-26 124.0 239 39.7
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 8.7e-25 118.2 210 41.0
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 1.1e-24 117.9 252 41.3
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 4.3e-24 115.9 200 43.5
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 2.1e-23 113.6 243 38.7
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 8.1e-23 111.7 236 39.4
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 5.3e-22 109.0 113 63.7
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 5.3e-22 109.0 207 39.1
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 9.0e-22 108.2 205 37.6
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 1.2e-21 107.8 211 39.8
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 1.2e-21 107.8 211 39.8
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.5e-21 107.5 211 40.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.0e-21 107.1 168 44.6
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 7.6e-21 105.1 210 38.1
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 7.6e-21 105.1 210 38.1
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 9.9e-21 104.8 232 36.6
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 9.9e-21 104.8 232 36.6
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 1.1e-19 101.3 209 36.4
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.4e-19 100.9 237 38.4
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 1.4e-19 100.9 128 53.1
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.2e-19 99.4 198 38.4
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 7.1e-19 98.6 238 36.1
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 2.7e-18 96.7 243 33.7
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 2.3e-17 93.6 194 39.2
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 8.7e-17 91.7 262 33.6
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 7.4e-16 88.6 202 38.1
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.1e-14 84.7 212 35.4
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 1.1e-14 84.7 227 33.0
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 1.4e-14 84.3 214 36.9
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 9.9e-13 78.2 168 40.5
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 2.9e-12 76.6 242 28.1
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 8.4e-12 75.1 224 29.9
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.4e-11 74.3 211 30.3
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 1.6e-10 70.9 113 52.2
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 7.9e-10 68.6 189 28.6
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 2.3e-09 67.0 90 43.3
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 8.7e-09 65.1 131 39.7
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 2.8e-07 60.1 44 56.8
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 3.7e-07 59.7 107 36.4
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 3.1e-06 56.6 157 33.8
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 9.0e-06 55.1 257 24.9
Lj4C91T0 Lonicera japonica HOM05D001755 ORTHO05D001665 9.0e-06 55.1 244 26.6
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 9.0e-06 55.1 236 25.0


User provided reference genes

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