Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 9.9e-64 246.5 116 100.0
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.7e-55 219.2 116 84.5
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 6.5e-55 217.2 110 89.1
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 5.5e-54 214.2 111 89.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 9.3e-54 213.4 116 84.5
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 9.3e-54 213.4 116 84.5
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.7e-53 211.8 116 84.5
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 7.9e-53 210.3 113 85.8
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 7.9e-53 210.3 112 84.8
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.0e-52 209.9 110 87.3
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 1.8e-52 209.1 113 84.1
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.8e-52 209.1 109 86.2
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.3e-52 208.8 110 85.5
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.9e-52 208.0 110 85.5
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 5.1e-52 207.6 113 84.1
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 5.1e-52 207.6 115 82.6
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 5.1e-52 207.6 110 86.4
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 6.7e-52 207.2 115 80.0
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.5e-51 206.1 110 85.5
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 2.5e-51 205.3 114 83.3
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 2.5e-51 205.3 116 81.0
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.5e-51 205.3 116 76.7
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.3e-51 204.9 116 76.7
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 4.3e-51 204.5 114 82.5
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 7.4e-51 203.8 110 82.7
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 7.4e-51 203.8 114 79.8
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 9.7e-51 203.4 114 79.8
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 9.7e-51 203.4 114 79.8
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.3e-50 203.0 115 81.7
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.6e-50 202.6 113 80.5
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.6e-50 202.6 114 82.5
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.6e-50 202.6 114 77.2
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.6e-50 202.6 112 81.2
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.6e-50 202.6 110 83.6
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.2e-50 202.2 114 82.5
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 2.8e-50 201.8 115 80.0
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.8e-50 201.8 116 79.3
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.8e-50 201.1 113 80.5
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 4.8e-50 201.1 114 80.7
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 4.8e-50 201.1 110 82.7
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 4.8e-50 201.1 110 81.8
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 6.3e-50 200.7 115 79.1
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 6.3e-50 200.7 110 81.8
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 8.2e-50 200.3 112 78.6
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 8.2e-50 200.3 113 78.8
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 8.2e-50 200.3 112 80.4
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.4e-49 199.5 109 83.5
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 1.4e-49 199.5 110 81.8
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.4e-49 199.5 110 81.8
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.4e-49 199.5 115 79.1
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 3.1e-49 198.4 113 78.8
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 3.1e-49 198.4 110 81.8
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 4.1e-49 198.0 110 81.8
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 4.1e-49 198.0 113 78.8
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.3e-49 197.6 109 81.7
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 5.3e-49 197.6 112 80.4
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 6.9e-49 197.2 110 80.9
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 6.9e-49 197.2 113 77.0
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 2.0e-48 195.7 110 80.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 2.6e-48 195.3 110 79.1
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 2.6e-48 195.3 110 79.1
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 2.6e-48 195.3 110 79.1
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 2.6e-48 195.3 110 79.1
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 2.6e-48 195.3 110 79.1
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.6e-48 195.3 113 79.6
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.6e-48 195.3 113 80.5
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 3.4e-48 194.9 116 75.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.9e-48 194.1 107 84.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 7.7e-48 193.7 112 80.4
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 7.7e-48 193.7 108 83.3
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.0e-47 193.4 115 76.5
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 1.0e-47 193.4 113 76.1
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.3e-47 193.0 108 80.6
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.3e-47 193.0 113 78.8
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 1.3e-47 193.0 114 76.3
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.9e-47 191.8 115 74.8
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.9e-47 191.8 112 76.8
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 2.9e-47 191.8 108 82.4
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.1e-46 189.9 114 75.4
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.4e-46 189.5 113 74.3
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 1.4e-46 189.5 112 76.8
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.5e-46 188.7 114 77.2
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 4.2e-46 188.0 120 74.2
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 5.5e-46 187.6 108 79.6
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.6e-45 186.0 108 77.8
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.1e-45 185.7 110 75.5
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.7e-45 185.3 114 71.9
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 4.6e-45 184.5 113 73.5
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.8e-44 182.6 110 78.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.1e-44 181.0 110 77.3
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 1.1e-43 179.9 112 74.1
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 4.3e-43 177.9 114 71.1
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.2e-42 175.6 112 70.5
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 7.7e-40 167.2 135 60.7
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 5.0e-39 164.5 104 71.2
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 1.6e-37 159.5 107 67.3
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.0e-36 156.8 112 67.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.0e-36 156.8 112 67.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.0e-36 155.2 96 72.9
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 5.1e-36 154.5 106 63.2
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 5.1e-36 154.5 107 63.6
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 1.5e-35 152.9 107 62.6
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 7.4e-35 150.6 105 63.8
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.3e-34 149.8 107 60.7
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.3e-34 149.8 107 61.7
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.3e-34 149.8 107 60.7
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.7e-34 149.4 104 63.5
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.2e-34 149.1 107 62.6
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.2e-34 147.1 103 63.1
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.4e-33 146.4 107 57.0
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.8e-33 146.0 103 61.2
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.8e-33 146.0 106 60.4
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 5.3e-33 144.4 107 58.9
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 7.0e-33 144.1 107 58.9
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 7.0e-33 144.1 106 61.3
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 9.1e-33 143.7 107 59.8
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 9.1e-33 143.7 108 57.4
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.2e-32 143.3 107 57.9
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 2.0e-32 142.5 107 57.9
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.6e-32 142.1 111 56.8
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 7.7e-32 140.6 107 57.0
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 7.7e-32 140.6 106 56.6
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.0e-31 140.2 106 56.6
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.3e-31 139.8 103 59.2
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.2e-31 139.0 98 65.3
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.9e-31 138.7 108 54.6
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.9e-31 138.7 103 58.3
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.8e-31 138.3 107 57.0
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 6.5e-31 137.5 107 52.3
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 6.5e-31 137.5 103 58.3
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 6.5e-31 137.5 107 56.1
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.1e-30 136.7 109 56.9
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.5e-30 136.3 107 59.8
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.5e-30 136.3 107 56.1
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-30 136.3 107 56.1
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.9e-30 136.0 107 57.0
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.5e-30 135.6 110 56.4
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.5e-30 135.6 107 54.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 3.2e-30 135.2 107 56.1
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.2e-30 134.8 107 56.1
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.6e-29 132.9 107 55.1
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.6e-29 132.9 95 64.2
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.7e-29 132.1 105 56.2
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.6e-29 131.7 107 54.2
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 6.1e-29 131.0 103 55.3
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 2.3e-28 129.0 64 85.9
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.0e-28 128.6 125 47.2
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 8.8e-28 127.1 139 43.9
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.3e-27 125.2 103 59.2
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 5.7e-27 124.4 132 45.5
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 9.7e-27 123.6 88 62.5
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.2e-26 122.5 59 91.5
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.7e-26 121.7 97 54.6
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.8e-26 121.3 105 51.4
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 8.2e-26 120.6 118 47.5
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.1e-25 118.6 106 50.0
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 3.1e-25 118.6 107 51.4
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.3e-23 113.2 191 34.6
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.1e-22 110.2 115 46.1
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.1e-22 110.2 115 46.1
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.7e-21 105.5 98 57.1
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 6.1e-21 104.4 214 30.8
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 8.0e-21 104.0 66 66.7
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.4e-20 103.2 93 50.5
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 1.8e-20 102.8 63 68.3
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 8.8e-20 100.5 114 42.1
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 8.3e-18 94.0 106 49.1
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 3.5e-16 88.6 61 62.3
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 1.2e-13 80.1 51 66.7
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.3e-12 75.9 77 49.4
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 9.8e-11 70.5 98 39.8
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.8e-10 68.9 47 59.6
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 6.3e-10 67.8 48 56.2
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.1e-09 65.5 47 61.7
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 9.1e-09 63.9 47 55.3
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 1.6e-08 63.2 47 55.3
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.5e-08 62.0 47 53.2
Mapoly0021s0016 Marchantia polymorpha HOM05D003884 ORTHO05D004482 3.5e-08 62.0 96 34.4
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 5.9e-08 61.2 47 55.3
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 3.8e-07 58.5 47 46.8
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.5e-06 56.6 43 60.5
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.5e-06 53.9 67 41.8
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 9.5e-06 53.9 47 48.9


User provided reference genes

Program Settings