Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0156F.1_g068780 Hydrangea macrophylla HOM05D006856 ORTHO05D008513 2.3e-85 318.9 167 100.0
QL02p096049 Quercus lobata HOM05D006856 ORTHO05D008513 1.7e-80 302.8 166 94.6
COL.COLO4_16067 Corchorus olitorius HOM05D006856 ORTHO05D008513 2.2e-80 302.4 166 94.0
Gohir.A05G006500 Gossypium hirsutum HOM05D006856 ORTHO05D008513 2.9e-80 302.0 167 93.4
Gorai.009G007500 Gossypium raimondii HOM05D006856 ORTHO05D008513 2.9e-80 302.0 167 93.4
Dinv41295 Davidia involucrata HOM05D006856 ORTHO05D008513 8.4e-80 300.4 167 92.8
MELO3C010164.2 Cucumis melo HOM05D006856 ORTHO05D008513 1.4e-79 299.7 167 92.2
Aa31LG8G15840 Aethionema arabicum HOM05D006856 ORTHO05D008513 2.4e-79 298.9 167 91.6
ClCG06G012940 Citrullus lanatus HOM05D006856 ORTHO05D008513 2.4e-79 298.9 167 92.2
CSS0009146 Camellia sinensis var. sinensis HOM05D006856 ORTHO05D008513 3.2e-79 298.5 165 93.9
CSS0027038 Camellia sinensis var. sinensis HOM05D006856 ORTHO05D008513 3.2e-79 298.5 165 93.9
CsaV3_1G029510 Cucumis sativus L. HOM05D006856 ORTHO05D008513 3.2e-79 298.5 167 91.6
Cc06_g13810 Coffea canephora HOM05D006856 ORTHO05D008513 5.4e-79 297.7 164 94.5
PGR102G2112 Punica granatum HOM05D006856 ORTHO05D008513 7.1e-79 297.4 165 92.7
Thecc.09G163300 Theobroma cacao HOM05D006856 ORTHO05D008513 7.1e-79 297.4 167 92.2
FAN07G2007 Fragaria x ananassa HOM05D006856 ORTHO05D008513 9.2e-79 297.0 167 92.2
CARHR109300 Cardamine hirsuta HOM05D006856 ORTHO05D008513 1.2e-78 296.6 167 91.0
Cfa013538 Carpinus fangiana HOM05D006856 ORTHO05D008513 1.2e-78 296.6 167 92.2
Nn8g40279 Nelumbo nucifera HOM05D006856 ORTHO05D008513 1.2e-78 296.6 166 91.6
Atru.chr7.548 Acer truncatum HOM05D006856 ORTHO05D008513 2.1e-78 295.8 167 91.6
Ciclev10007941m.g Citrus clementina HOM05D006856 ORTHO05D008513 2.1e-78 295.8 164 93.3
FAN12G3745 Fragaria x ananassa HOM05D006856 ORTHO05D008513 2.1e-78 295.8 167 91.6
HanXRQChr05g0136541 Helianthus annuus HOM05D006856 ORTHO05D008513 2.1e-78 295.8 163 93.9
Potri.018G097500 Populus trichocarpa HOM05D006856 ORTHO05D008513 2.1e-78 295.8 167 91.0
RcHm_v2.0_Chr4g0404181 Rosa chinensis HOM05D006856 ORTHO05D008513 2.1e-78 295.8 167 92.2
Ah.09g229580 Amaranthus hybridus HOM05D006856 ORTHO05D008513 2.7e-78 295.4 163 93.9
Carub.0003s3299 Capsella rubella HOM05D006856 ORTHO05D008513 2.7e-78 295.4 167 90.4
FvH4_4g08350 Fragaria vesca HOM05D006856 ORTHO05D008513 2.7e-78 295.4 167 91.6
MD13G1262000 Malus domestica HOM05D006856 ORTHO05D008513 2.7e-78 295.4 167 91.6
Sed0018519 Sechium edule HOM05D006856 ORTHO05D008513 2.7e-78 295.4 167 91.0
AL3G52100 Arabidopsis lyrata HOM05D006856 ORTHO05D008513 3.5e-78 295.0 167 90.4
AUR62039977 Chenopodium quinoa HOM05D006856 ORTHO05D008513 3.5e-78 295.0 163 93.3
Haze_22153 Corylus avellana HOM05D006856 ORTHO05D008513 3.5e-78 295.0 167 91.6
Sc14g0001120 Simmondsia chinensis HOM05D006856 ORTHO05D008513 3.5e-78 295.0 167 90.4
TWI63G1451 Tripterygium wilfordii HOM05D006856 ORTHO05D008513 3.5e-78 295.0 167 92.2
BcaB03g16664 Brassica carinata HOM05D006856 ORTHO05D008513 4.6e-78 294.7 167 90.4
Thhalv10022631m.g Eutrema salsugineum HOM05D006856 ORTHO05D008513 4.6e-78 294.7 167 90.4
Sp3g32210 Schrenkiella parvula HOM05D006856 ORTHO05D008513 4.6e-78 294.7 167 90.4
BcaC06g36454 Brassica carinata HOM05D006856 ORTHO05D008513 6.0e-78 294.3 167 90.4
A07p01890 Brassica napus HOM05D006856 ORTHO05D008513 6.0e-78 294.3 167 90.4
BolC7t40795H Brassica oleracea HOM05D006856 ORTHO05D008513 6.0e-78 294.3 167 90.4
BraA07t27989Z Brassica rapa HOM05D006856 ORTHO05D008513 6.0e-78 294.3 167 90.4
ECA236G0175 Erigeron canadensis HOM05D000122 ORTHO05D008513 1.0e-77 293.5 163 92.0
Rhsim01G0009700 Rhododendron simsii HOM05D006856 ORTHO05D008513 1.0e-77 293.5 164 92.7
vmacro13083 Vaccinium macrocarpon HOM05D006856 ORTHO05D008513 1.0e-77 293.5 163 93.9
Cpa.g.sc75.6 Carica papaya HOM05D006856 ORTHO05D008513 1.3e-77 293.1 167 89.8
Lsat_1_v5_gn_8_65481 Lactuca sativa HOM05D006856 ORTHO05D008513 1.3e-77 293.1 163 92.6
AT2G18710 Arabidopsis thaliana HOM05D006856 ORTHO05D008513 1.7e-77 292.7 167 89.8
Eucgr.C02439 Eucalyptus grandis HOM05D006856 ORTHO05D008513 2.3e-77 292.4 164 92.7
Duzib168G1624 Durio zibethinus HOM05D006856 ORTHO05D008513 3.0e-77 292.0 167 91.6
Prupe.1G095100 Prunus persica HOM05D006856 ORTHO05D008513 3.0e-77 292.0 167 91.0
Lj9A729G40 Lonicera japonica HOM05D006856 ORTHO05D008513 3.9e-77 291.6 161 93.8
EL10Ac8g18856 Beta vulgaris HOM05D006856 ORTHO05D008513 5.1e-77 291.2 163 90.8
CANSAT11G0081 Cannabis sativa HOM05D006856 ORTHO05D008513 5.1e-77 291.2 167 89.2
Actinidia04112 Actinidia chinensis HOM05D006856 ORTHO05D008513 6.6e-77 290.8 164 92.7
C07p04040 Brassica napus HOM05D006856 ORTHO05D008513 6.6e-77 290.8 167 89.8
Oeu052230.1 Olea europaea HOM05D006856 ORTHO05D008513 6.6e-77 290.8 164 91.5
Os08g0254500 Oryza sativa ssp. japonica HOM05D006856 ORTHO05D008513 8.6e-77 290.4 165 87.9
PSO782G4753 Papaver somniferum HOM05D006856 ORTHO05D008513 8.6e-77 290.4 161 92.5
TAR625G0312 Trochodendron aralioides HOM05D006856 ORTHO05D008513 1.1e-76 290.0 164 92.1
VMungo1309G0656 Vigna mungo HOM05D006856 ORTHO05D008513 1.1e-76 290.0 164 91.5
ATR0580G382 Amborella trichopoda HOM05D006856 ORTHO05D008513 1.5e-76 289.7 164 90.9
PSO063G5552 Papaver somniferum HOM05D006856 ORTHO05D008513 1.5e-76 289.7 161 92.5
Phvul.009G206700 Phaseolus vulgaris HOM05D006856 ORTHO05D008513 1.5e-76 289.7 164 90.9
DCAR_009903 Daucus carota HOM05D006856 ORTHO05D008513 1.9e-76 289.3 164 90.9
Potri.006G175300 Populus trichocarpa HOM05D006856 ORTHO05D008513 2.5e-76 288.9 163 90.8
CAN.G584.40 Capsicum annuum HOM05D006856 ORTHO05D008513 3.3e-76 288.5 161 92.5
Glyma.06G223700 Glycine max HOM05D006856 ORTHO05D008513 3.3e-76 288.5 164 90.2
PGSC0003DMG400027471 Solanum tuberosum HOM05D006856 ORTHO05D008513 3.3e-76 288.5 161 92.5
Peaxi162Scf00457g00213 Petunia axillaris HOM05D006856 ORTHO05D008513 4.3e-76 288.1 161 93.2
Zm00001eb412690 Zea mays HOM05D006856 ORTHO05D008513 4.3e-76 288.1 164 87.2
Solyc07g006520.3 Solanum lycopersicum HOM05D006856 ORTHO05D008513 5.6e-76 287.7 161 92.5
Sopen07g002600 Solanum pennellii HOM05D006856 ORTHO05D008513 5.6e-76 287.7 161 92.5
THA.LOC104803512 Tarenaya hassleriana HOM05D006856 ORTHO05D008513 7.3e-76 287.3 167 89.2
HPP92_013473 Vanilla planifolia HOM05D006856 ORTHO05D008513 7.3e-76 287.3 167 87.4
CiPaw.07G187500 Carya illinoinensis HOM05D006856 ORTHO05D008513 9.6e-76 287.0 161 93.2
CDE07G0969 Ceratophyllum demersum HOM05D006856 ORTHO05D008513 9.6e-76 287.0 164 90.9
Lalb_Chr11g0072371 Lupinus albus HOM05D006856 ORTHO05D008513 9.6e-76 287.0 164 88.4
MSTRG.6183 Avicennia marina HOM05D006856 ORTHO05D008513 1.2e-75 286.6 164 90.9
Manes.06G029400 Manihot esculenta HOM05D006856 ORTHO05D008513 1.2e-75 286.6 167 88.6
Sabra06G0134100 Salix brachista HOM05D006856 ORTHO05D008513 1.6e-75 286.2 165 88.5
TPR.G6090 Trifolium pratense HOM05D006856 ORTHO05D008513 1.6e-75 286.2 164 89.6
Migut.J01435 Erythranthe guttata HOM05D006856 ORTHO05D008513 2.1e-75 285.8 164 90.2
Nitab4.5_0000244g0040 Nicotiana tabacum HOM05D006856 ORTHO05D008513 2.1e-75 285.8 161 91.3
Nitab4.5_0008689g0030 Nicotiana tabacum HOM05D006856 ORTHO05D008513 2.1e-75 285.8 161 91.3
Lj6g0015479 Lotus japonicus HOM05D006856 ORTHO05D008513 2.8e-75 285.4 163 90.2
Medtr2g460600 Medicago truncatula HOM05D006856 ORTHO05D008513 2.8e-75 285.4 164 89.0
Aqoxy7G03196 Aquilegia oxysepala HOM05D006856 ORTHO05D008513 3.6e-75 285.0 161 90.7
SalBow6G0188 Salvia bowleyana HOM05D006856 ORTHO05D008513 3.6e-75 285.0 163 90.8
GSVIVG01032310001 Vitis vinifera HOM05D006856 ORTHO05D008513 3.6e-75 285.0 163 89.6
Ca_13264_v3 Cicer arietinum L. HOM05D006856 ORTHO05D008513 1.1e-74 283.5 164 88.4
CDE04G1353 Ceratophyllum demersum HOM05D006856 ORTHO05D008513 9.0e-74 280.4 164 90.2
SalBow6G1082 Salvia bowleyana HOM05D006856 ORTHO05D008513 2.6e-73 278.9 168 88.1
arahy.Tifrunner.gnm1.ann1.2SJ209 Arachis hypogaea HOM05D006856 ORTHO05D008513 4.4e-73 278.1 177 83.6
arahy.Tifrunner.gnm1.ann1.B7H9XX Arachis hypogaea HOM05D006856 ORTHO05D008513 4.4e-73 278.1 177 83.6
SEGI_15046 Sequoiadendron giganteum HOM05D006856 ORTHO05D008513 6.4e-72 274.2 161 88.2
AUR62040286 Chenopodium quinoa HOM05D006856 ORTHO05D008513 3.9e-69 265.0 163 85.9
AagrBONN_evm.TU.Sc2ySwM_368.1345 Anthoceros agrestis HOM05D006856 ORTHO05D008513 2.2e-64 249.2 163 74.8
Pp3c16_5240 Physcomitrium patens HOM05D006856 ORTHO05D008513 4.6e-62 241.5 161 77.0
Mapoly0033s0078 Marchantia polymorpha HOM05D006856 ORTHO05D008513 6.0e-62 241.1 161 73.3
Hund08997 Selenicereus undatus HOM05D006856 ORTHO05D008513 1.9e-60 236.1 129 91.5
Glyma.04G157300 Glycine max HOM05D006856 ORTHO05D008513 4.8e-59 231.5 151 79.5
SMO147G0170 Selaginella moellendorffii HOM05D006856 ORTHO05D008513 4.8e-59 231.5 158 74.1
Nitab4.5_0009672g0040 Nicotiana tabacum HOM05D006856 ORTHO05D008513 1.5e-57 226.5 121 95.0
CBR_g23006 Chara braunii HOM05D006856 ORTHO05D008513 2.4e-55 219.2 153 70.6
PRCOL_00001282 Prasinoderma coloniale HOM05D006856 ORTHO05D008513 1.4e-47 193.4 152 65.8
Cre16.g681900 Chlamydomonas reinhardtii HOM05D006856 ORTHO05D008513 4.6e-46 188.3 161 57.8
MCO14G520 Micromonas commoda HOM05D006856 ORTHO05D008513 6.7e-45 184.5 153 62.7
MCO14G543 Micromonas commoda HOM05D006856 ORTHO05D008513 6.7e-45 184.5 153 62.7
Psat1g025280 Pisum sativum HOM05D006856 ORTHO05D008513 2.7e-38 162.5 108 81.5
Thhalv10019560m.g Eutrema salsugineum HOM05D006856 ORTHO05D008513 1.5e-25 120.2 119 60.5
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 1.5e-12 77.0 138 31.9
Hund08996 Selenicereus undatus HOM05D006856 ORTHO05D008513 1.6e-09 67.0 40 82.5
SGA_v2.0_scaffold66G22509 Striga asiatica HOM05D006856 ORTHO05D008513 4.2e-07 58.9 35 82.9
Duzib138G0982 Durio zibethinus HOM05D005331 ORTHO05D007596 5.5e-07 58.5 150 27.3
FvH4_2g23670 Fragaria vesca HOM05D005331 ORTHO05D007596 7.2e-07 58.2 150 28.7
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 7.2e-07 58.2 150 28.7
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 7.2e-07 58.2 150 28.7
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 7.2e-07 58.2 150 28.7
AUR62018058 Chenopodium quinoa HOM05D005331 ORTHO05D007596 9.4e-07 57.8 150 28.0
Hma1.2p1_0257F.1_g103510 Hydrangea macrophylla HOM05D005331 ORTHO05D007596 9.4e-07 57.8 151 29.1
PGR044G2121 Punica granatum HOM05D005331 ORTHO05D007596 1.2e-06 57.4 150 27.3
AUR62015257 Chenopodium quinoa HOM05D005331 ORTHO05D007596 1.6e-06 57.0 150 28.0
TWI14G1044 Tripterygium wilfordii HOM05D005331 ORTHO05D007596 1.6e-06 57.0 150 28.0
RcHm_v2.0_Chr6g0291131 Rosa chinensis HOM05D005331 ORTHO05D007596 2.1e-06 56.6 150 27.3
TAR633G1479 Trochodendron aralioides HOM05D005331 ORTHO05D007596 2.7e-06 56.2 152 30.3
CARHR125170 Cardamine hirsuta HOM05D005331 ORTHO05D007596 3.6e-06 55.8 151 27.8
Lalb_Chr01g0013751 Lupinus albus HOM05D005331 ORTHO05D007596 3.6e-06 55.8 150 28.0
Manes.05G075600 Manihot esculenta HOM05D005331 ORTHO05D007596 3.6e-06 55.8 150 28.0
Actinidia24888 Actinidia chinensis HOM05D005331 ORTHO05D007596 4.7e-06 55.5 150 27.3
EL10Ac4g08368 Beta vulgaris HOM05D005331 ORTHO05D007596 4.7e-06 55.5 150 26.7
BcaC01g05946 Brassica carinata HOM05D005331 ORTHO05D007596 4.7e-06 55.5 151 27.8
A03p17680 Brassica napus HOM05D005331 ORTHO05D007596 4.7e-06 55.5 151 27.8
BraA03t11033Z Brassica rapa HOM05D005331 ORTHO05D007596 4.7e-06 55.5 151 27.8
Thhalv10016447m.g Eutrema salsugineum HOM05D005331 ORTHO05D007596 4.7e-06 55.5 151 27.8
AL4G26780 Arabidopsis lyrata HOM05D005331 ORTHO05D007596 6.1e-06 55.1 151 27.8
Gohir.A12G005400 Gossypium hirsutum HOM05D005331 ORTHO05D007596 6.1e-06 55.1 150 26.0
Gohir.D12G004900 Gossypium hirsutum HOM05D005331 ORTHO05D007596 6.1e-06 55.1 150 26.0
Gorai.008G004800 Gossypium raimondii HOM05D005331 ORTHO05D007596 6.1e-06 55.1 150 26.0
MD03G1266100 Malus domestica HOM05D005331 ORTHO05D007596 6.1e-06 55.1 150 27.3
MD11G1286500 Malus domestica HOM05D005331 ORTHO05D007596 6.1e-06 55.1 150 27.3
AT2G31530 Arabidopsis thaliana HOM05D005331 ORTHO05D007596 8.0e-06 54.7 151 27.8
BcaB01g04039 Brassica carinata HOM05D005331 ORTHO05D007596 8.0e-06 54.7 151 27.8
Carub.0004s1284 Capsella rubella HOM05D005331 ORTHO05D007596 8.0e-06 54.7 151 27.8
Nn1g02210 Nelumbo nucifera HOM05D005331 ORTHO05D007596 8.0e-06 54.7 152 28.9
Phvul.001G150500 Phaseolus vulgaris HOM05D005331 ORTHO05D007596 8.0e-06 54.7 150 28.0
Prupe.8G241800 Prunus persica HOM05D005331 ORTHO05D007596 8.0e-06 54.7 150 26.7
Thecc.01G280200 Theobroma cacao HOM05D005331 ORTHO05D007596 8.0e-06 54.7 151 27.8


User provided reference genes

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