Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 5.4e-128 461.1 242 100.0
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 8.3e-113 410.6 264 85.2
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 2.6e-90 335.9 259 72.2
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 6.9e-83 311.2 263 66.5
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 1.3e-81 307.0 260 68.1
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 2.9e-81 305.8 262 65.3
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 4.9e-81 305.1 266 66.9
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 1.4e-80 303.5 261 67.0
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 1.6e-79 300.1 260 65.0
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 2.7e-79 299.3 260 65.0
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 1.7e-78 296.6 261 65.5
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 2.3e-78 296.2 276 63.4
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 3.9e-78 295.4 265 64.5
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 5.1e-78 295.0 259 65.6
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 8.7e-78 294.3 259 61.4
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 1.1e-77 293.9 260 64.6
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 1.1e-77 293.9 267 61.8
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 2.1e-76 289.7 257 66.1
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 4.8e-76 288.5 253 65.2
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 4.8e-76 288.5 253 65.2
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 4.8e-76 288.5 253 65.2
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 4.8e-76 288.5 253 65.2
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 5.3e-75 285.0 259 61.4
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 1.2e-74 283.9 266 63.2
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 1.5e-74 283.5 260 64.2
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 2.0e-74 283.1 264 63.6
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 2.6e-74 282.7 252 64.3
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 3.4e-74 282.3 269 61.3
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 4.5e-74 282.0 260 62.3
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 5.8e-74 281.6 265 61.5
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 7.6e-74 281.2 273 58.2
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 1.3e-73 280.4 255 62.0
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.9e-73 279.3 255 61.6
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 6.4e-73 278.1 255 61.6
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 2.4e-72 276.2 258 60.1
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 7.1e-72 274.6 267 61.0
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 9.3e-72 274.2 259 60.6
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.6e-71 273.5 253 61.3
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 2.1e-71 273.1 267 61.4
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 8.7e-70 267.7 263 58.2
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 8.7e-70 267.7 267 60.7
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 2.5e-69 266.2 265 58.5
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 4.3e-69 265.4 260 59.2
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 6.2e-68 261.5 267 59.6
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 8.1e-68 261.2 262 58.8
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 1.4e-67 260.4 261 59.0
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 1.4e-67 260.4 261 59.4
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.8e-67 260.0 255 58.8
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.0e-66 256.5 260 58.5
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 5.8e-66 255.0 259 57.1
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 1.0e-65 254.2 259 56.0
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 1.7e-65 253.4 261 58.6
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 2.9e-65 252.7 313 49.8
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 2.9e-65 252.7 259 56.4
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 4.9e-65 251.9 261 58.6
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 8.4e-65 251.1 259 59.1
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.9e-64 250.0 259 56.0
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 3.2e-64 249.2 254 58.7
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 7.1e-64 248.1 265 55.5
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 2.1e-63 246.5 265 55.5
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 3.5e-63 245.7 272 54.4
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 7.9e-63 244.6 242 62.0
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 8.7e-62 241.1 265 56.6
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 1.1e-61 240.7 257 54.5
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 3.3e-61 239.2 258 55.4
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 1.6e-60 236.9 257 56.8
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 6.2e-60 235.0 260 55.8
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 8.2e-60 234.6 267 56.9
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 2.4e-59 233.0 232 62.1
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 4.1e-59 232.3 270 53.3
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 7.6e-58 228.0 259 55.2
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 2.9e-57 226.1 264 53.8
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 8.4e-57 224.6 259 53.7
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 8.4e-57 224.6 260 53.1
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 5.5e-56 221.9 264 50.0
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 2.7e-55 219.5 265 52.5
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 3.5e-55 219.2 261 54.0
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.3e-54 217.2 268 50.7
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 2.3e-54 216.5 263 52.9
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.3e-52 210.7 260 53.1
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 1.6e-52 210.3 253 51.0
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 3.1e-51 206.1 277 52.0
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 2.0e-50 203.4 265 49.8
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 2.6e-50 203.0 234 54.3
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 5.9e-50 201.8 268 50.0
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 7.7e-50 201.4 261 51.3
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.3e-49 200.7 253 52.2
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.7e-49 200.3 269 49.1
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 2.2e-49 199.9 268 50.4
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 2.9e-49 199.5 268 48.9
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 6.5e-49 198.4 265 50.2
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 2.5e-48 196.4 268 45.9
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 7.2e-48 194.9 268 49.3
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 7.2e-48 194.9 264 47.7
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 9.4e-48 194.5 261 49.8
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 2.1e-47 193.4 268 49.6
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 2.7e-47 193.0 204 56.4
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 7.9e-47 191.4 268 49.3
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 2.5e-45 186.4 269 47.2
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 3.3e-45 186.0 257 48.6
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 1.3e-44 184.1 261 46.0
Cfa015266 Carpinus fangiana HOM05D005056 ORTHO05D006487 2.2e-44 183.3 172 64.0
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 4.5e-42 175.6 255 48.2
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 3.8e-41 172.6 255 47.8
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 5.0e-41 172.2 267 47.2
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 1.4e-38 164.1 257 44.0
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 4.4e-37 159.1 229 45.4
Lj7A489T32 Lonicera japonica HOM05D005056 ORTHO05D006487 3.7e-36 156.0 178 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 4.8e-36 155.6 257 42.4
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 1.8e-35 153.7 168 54.8
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 1.7e-33 147.1 243 44.0
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 3.2e-32 142.9 161 54.7
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 3.0e-30 136.3 144 57.6
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 5.2e-30 135.6 161 54.0
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 6.7e-30 135.2 158 55.1
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-28 130.6 113 61.9
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-28 130.6 113 61.9
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.7e-28 129.4 195 47.2
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 6.3e-28 128.6 247 39.7
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 2.4e-27 126.7 196 46.9
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 1.7e-25 120.6 177 48.0
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.7e-25 120.6 137 54.7
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 4.0e-22 109.4 269 33.8
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 3.7e-20 102.8 97 62.9
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 3.1e-19 99.8 107 57.0
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.6e-18 97.4 101 59.4
Eucgr.H00313 Eucalyptus grandis HOM05D005056 ORTHO05D006487 8.5e-17 91.7 87 60.9
MD04G1048900 Malus domestica HOM05D005056 ORTHO05D006487 1.5e-16 90.9 83 56.6
Thhalv10001371m.g Eutrema salsugineum HOM05D005056 ORTHO05D006487 7.2e-16 88.6 201 36.8
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 7.2e-16 88.6 63 73.0
QL10p055599 Quercus lobata HOM05D005056 ORTHO05D006487 1.4e-14 84.3 75 61.3
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 2.6e-13 80.1 80 60.0
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 2.6e-13 80.1 80 60.0
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 4.4e-13 79.3 135 41.5
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 4.4e-13 79.3 252 31.7
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 6.3e-12 75.5 62 62.9
BcaC02g07158 Brassica carinata HOM05D000156 ORTHO05D004238 7.0e-11 72.0 109 47.7
BcaB06g29336 Brassica carinata HOM05D005056 ORTHO05D006487 2.9e-09 66.6 112 43.8
Aqoxy5G03459 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.6e-07 60.8 139 37.4
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 5.2e-06 55.8 278 24.8


User provided reference genes

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